Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS00445

Experiment: Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS00440 and ABI39_RS00445 are separated by 251 nucleotidesABI39_RS00445 and ABI39_RS00450 are separated by 56 nucleotides ABI39_RS00440: ABI39_RS00440 - excinuclease ABC subunit UvrA, at 124,237 to 127,038 _RS00440 ABI39_RS00445: ABI39_RS00445 - endonuclease/exonuclease/phosphatase family protein, at 127,290 to 128,321 _RS00445 ABI39_RS00450: ABI39_RS00450 - family 20 glycosylhydrolase, at 128,378 to 130,684 _RS00450 Position (kb) 127 128 129Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 126.301 kb on + strand, within ABI39_RS00440at 126.302 kb on - strand, within ABI39_RS00440at 126.314 kb on - strand, within ABI39_RS00440at 126.369 kb on + strand, within ABI39_RS00440at 126.537 kb on + strand, within ABI39_RS00440at 126.547 kb on + strand, within ABI39_RS00440at 126.658 kb on - strand, within ABI39_RS00440at 126.722 kb on - strand, within ABI39_RS00440at 126.754 kb on - strand, within ABI39_RS00440at 126.871 kb on - strandat 127.085 kb on - strandat 127.092 kb on + strandat 127.092 kb on + strandat 127.101 kb on + strandat 127.107 kb on + strandat 127.126 kb on + strandat 127.203 kb on + strandat 127.307 kb on - strandat 127.413 kb on + strand, within ABI39_RS00445at 127.422 kb on - strand, within ABI39_RS00445at 127.474 kb on + strand, within ABI39_RS00445at 127.546 kb on - strand, within ABI39_RS00445at 127.554 kb on + strand, within ABI39_RS00445at 127.555 kb on - strand, within ABI39_RS00445at 127.560 kb on + strand, within ABI39_RS00445at 127.561 kb on - strand, within ABI39_RS00445at 127.561 kb on - strand, within ABI39_RS00445at 127.566 kb on - strand, within ABI39_RS00445at 127.566 kb on - strand, within ABI39_RS00445at 127.684 kb on - strand, within ABI39_RS00445at 127.701 kb on + strand, within ABI39_RS00445at 127.721 kb on + strand, within ABI39_RS00445at 127.786 kb on + strand, within ABI39_RS00445at 127.786 kb on + strand, within ABI39_RS00445at 127.789 kb on + strand, within ABI39_RS00445at 127.832 kb on - strand, within ABI39_RS00445at 127.961 kb on - strand, within ABI39_RS00445at 128.025 kb on + strand, within ABI39_RS00445at 128.035 kb on + strand, within ABI39_RS00445at 128.036 kb on - strand, within ABI39_RS00445at 128.036 kb on - strand, within ABI39_RS00445at 128.039 kb on - strand, within ABI39_RS00445at 128.044 kb on - strand, within ABI39_RS00445at 128.132 kb on - strand, within ABI39_RS00445at 128.137 kb on - strand, within ABI39_RS00445at 128.249 kb on + strandat 128.251 kb on + strandat 128.273 kb on + strandat 128.369 kb on + strandat 128.370 kb on - strandat 128.389 kb on + strandat 128.396 kb on - strandat 128.396 kb on - strandat 128.396 kb on - strandat 128.450 kb on - strandat 128.630 kb on - strand, within ABI39_RS00450at 128.696 kb on + strand, within ABI39_RS00450at 128.696 kb on + strand, within ABI39_RS00450at 128.699 kb on - strand, within ABI39_RS00450at 128.800 kb on - strand, within ABI39_RS00450at 128.887 kb on + strand, within ABI39_RS00450at 128.920 kb on - strand, within ABI39_RS00450at 129.084 kb on + strand, within ABI39_RS00450at 129.100 kb on + strand, within ABI39_RS00450at 129.103 kb on + strand, within ABI39_RS00450at 129.162 kb on + strand, within ABI39_RS00450at 129.164 kb on + strand, within ABI39_RS00450at 129.205 kb on - strand, within ABI39_RS00450at 129.228 kb on + strand, within ABI39_RS00450at 129.229 kb on - strand, within ABI39_RS00450at 129.232 kb on + strand, within ABI39_RS00450at 129.235 kb on + strand, within ABI39_RS00450at 129.236 kb on - strand, within ABI39_RS00450at 129.277 kb on - strand, within ABI39_RS00450at 129.285 kb on - strand, within ABI39_RS00450

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Per-strain Table

Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
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126,301 + ABI39_RS00440 0.74 -3.0
126,302 - ABI39_RS00440 0.74 -2.2
126,314 - ABI39_RS00440 0.74 -0.4
126,369 + ABI39_RS00440 0.76 -1.5
126,537 + ABI39_RS00440 0.82 +1.0
126,547 + ABI39_RS00440 0.82 -0.5
126,658 - ABI39_RS00440 0.86 +1.8
126,722 - ABI39_RS00440 0.89 -0.9
126,754 - ABI39_RS00440 0.90 -3.9
126,871 - -5.1
127,085 - +0.4
127,092 + +0.9
127,092 + +0.4
127,101 + +1.1
127,107 + -0.0
127,126 + -0.8
127,203 + +0.9
127,307 - +0.3
127,413 + ABI39_RS00445 0.12 -0.7
127,422 - ABI39_RS00445 0.13 -2.4
127,474 + ABI39_RS00445 0.18 -1.0
127,546 - ABI39_RS00445 0.25 -0.6
127,554 + ABI39_RS00445 0.26 +0.9
127,555 - ABI39_RS00445 0.26 +0.1
127,560 + ABI39_RS00445 0.26 -1.2
127,561 - ABI39_RS00445 0.26 -3.7
127,561 - ABI39_RS00445 0.26 +1.2
127,566 - ABI39_RS00445 0.27 -3.6
127,566 - ABI39_RS00445 0.27 -0.4
127,684 - ABI39_RS00445 0.38 -3.7
127,701 + ABI39_RS00445 0.40 -0.5
127,721 + ABI39_RS00445 0.42 -3.5
127,786 + ABI39_RS00445 0.48 +0.8
127,786 + ABI39_RS00445 0.48 -1.1
127,789 + ABI39_RS00445 0.48 -4.7
127,832 - ABI39_RS00445 0.53 +0.9
127,961 - ABI39_RS00445 0.65 -4.0
128,025 + ABI39_RS00445 0.71 +1.5
128,035 + ABI39_RS00445 0.72 +0.4
128,036 - ABI39_RS00445 0.72 +1.6
128,036 - ABI39_RS00445 0.72 +1.6
128,039 - ABI39_RS00445 0.73 -2.6
128,044 - ABI39_RS00445 0.73 -0.9
128,132 - ABI39_RS00445 0.82 -3.8
128,137 - ABI39_RS00445 0.82 -0.9
128,249 + +1.3
128,251 + +0.9
128,273 + -3.5
128,369 + -1.4
128,370 - -1.0
128,389 + -2.9
128,396 - +1.0
128,396 - +1.6
128,396 - +0.8
128,450 - +0.8
128,630 - ABI39_RS00450 0.11 -1.5
128,696 + ABI39_RS00450 0.14 +0.9
128,696 + ABI39_RS00450 0.14 -0.1
128,699 - ABI39_RS00450 0.14 +0.5
128,800 - ABI39_RS00450 0.18 +1.6
128,887 + ABI39_RS00450 0.22 -0.1
128,920 - ABI39_RS00450 0.23 +0.9
129,084 + ABI39_RS00450 0.31 -3.2
129,100 + ABI39_RS00450 0.31 -3.3
129,103 + ABI39_RS00450 0.31 -0.7
129,162 + ABI39_RS00450 0.34 +0.9
129,164 + ABI39_RS00450 0.34 +0.7
129,205 - ABI39_RS00450 0.36 +0.5
129,228 + ABI39_RS00450 0.37 +0.9
129,229 - ABI39_RS00450 0.37 +1.0
129,232 + ABI39_RS00450 0.37 -3.8
129,235 + ABI39_RS00450 0.37 +1.1
129,236 - ABI39_RS00450 0.37 +0.9
129,277 - ABI39_RS00450 0.39 +0.6
129,285 - ABI39_RS00450 0.39 +0.2

Or see this region's nucleotide sequence