Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS20310

Experiment: Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
5,012,061	+		ABI39_RS20305	0.30	-0.5
5,012,139	+		ABI39_RS20305	0.36	+2.2
5,012,155	-		ABI39_RS20305	0.37	+0.5
5,012,262	+		ABI39_RS20305	0.44	+1.0
5,012,263	-		ABI39_RS20305	0.45	-0.3
5,012,265	-		ABI39_RS20305	0.45	-1.1
5,012,265	-		ABI39_RS20305	0.45	-3.0
5,012,367	-		ABI39_RS20305	0.52	-1.6
5,012,380	+		ABI39_RS20305	0.53	+1.9
5,012,430	+		ABI39_RS20305	0.56	+2.5
5,012,430	+		ABI39_RS20305	0.56	+0.7
5,012,477	+		ABI39_RS20305	0.60	-0.2
5,012,510	-		ABI39_RS20305	0.62	-2.9
5,012,602	-		ABI39_RS20305	0.68	-2.3
5,012,648	+		ABI39_RS20305	0.72	-2.2
5,012,760	+		ABI39_RS20305	0.79	+0.8
5,012,825	+		ABI39_RS20305	0.84	+1.6
5,012,829	+		ABI39_RS20305	0.84	+0.9
5,012,997	+				+2.0
5,013,013	+				+0.7
5,013,087	+				+1.7
5,013,199	+		ABI39_RS20310	0.19	+1.7
5,013,213	+		ABI39_RS20310	0.20	+1.4
5,013,282	+		ABI39_RS20310	0.29	-1.7
5,013,283	-		ABI39_RS20310	0.29	-1.8
5,013,285	+		ABI39_RS20310	0.29	+2.9
5,013,492	+		ABI39_RS20310	0.54	+0.5
5,013,533	-		ABI39_RS20310	0.59	-1.3
5,013,545	+		ABI39_RS20310	0.60	-0.1
5,013,550	+		ABI39_RS20310	0.61	+1.2
5,013,555	-		ABI39_RS20310	0.62	-1.1
5,013,555	-		ABI39_RS20310	0.62	+0.5
5,013,555	-		ABI39_RS20310	0.62	-2.2
5,013,629	+		ABI39_RS20310	0.71	+1.4
5,013,652	-		ABI39_RS20310	0.73	-1.1
5,013,662	+		ABI39_RS20310	0.75	+1.7
5,013,708	+		ABI39_RS20310	0.80	+0.0
5,013,718	-		ABI39_RS20310	0.81	-0.9
5,013,821	-				+0.2
5,013,859	-				-2.5
5,013,909	-				+0.1
5,013,920	+				+1.8
5,013,930	+				+1.6
5,014,034	+		ABI39_RS20315	0.13	+2.8
5,014,035	-		ABI39_RS20315	0.13	+2.4
5,014,036	+		ABI39_RS20315	0.13	-0.8
5,014,036	+		ABI39_RS20315	0.13	-1.2
5,014,036	+		ABI39_RS20315	0.13	-0.0
5,014,037	-		ABI39_RS20315	0.13	-0.8
5,014,037	-		ABI39_RS20315	0.13	-0.8
5,014,037	-		ABI39_RS20315	0.13	-0.6
5,014,037	-		ABI39_RS20315	0.13	+1.0
5,014,039	-		ABI39_RS20315	0.13	-1.8
5,014,059	+		ABI39_RS20315	0.15	+1.5
5,014,060	-		ABI39_RS20315	0.15	-2.0
5,014,092	+		ABI39_RS20315	0.17	-0.2
5,014,092	+		ABI39_RS20315	0.17	+2.4
5,014,106	+		ABI39_RS20315	0.18	-0.1
5,014,151	+		ABI39_RS20315	0.22	+2.7
5,014,171	+		ABI39_RS20315	0.24	+0.6
5,014,172	-		ABI39_RS20315	0.24	+1.2
5,014,182	+		ABI39_RS20315	0.25	+2.7
5,014,182	+		ABI39_RS20315	0.25	+1.4
5,014,189	-		ABI39_RS20315	0.25	+1.0
5,014,202	+		ABI39_RS20315	0.26	+1.8
5,014,292	-		ABI39_RS20315	0.33	-0.8
5,014,308	-		ABI39_RS20315	0.35	-0.9
5,014,313	-		ABI39_RS20315	0.35	-1.4
5,014,314	+		ABI39_RS20315	0.35	+0.7
5,014,391	-		ABI39_RS20315	0.42	+0.4
5,014,451	+		ABI39_RS20315	0.46	+1.3
5,014,463	+		ABI39_RS20315	0.47	+0.8
5,014,468	-		ABI39_RS20315	0.48	-3.1
5,014,490	+		ABI39_RS20315	0.50	+2.6
5,014,532	+		ABI39_RS20315	0.53	-0.5
5,014,768	-		ABI39_RS20315	0.72	-0.2
5,014,865	+		ABI39_RS20315	0.80	+1.3