Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS17430

Experiment: Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
4,400,639	+		ABI39_RS17425	0.40	+0.4
4,400,717	+		ABI39_RS17425	0.46	-2.2
4,400,723	+		ABI39_RS17425	0.46	+0.4
4,400,731	-		ABI39_RS17425	0.47	+0.2
4,400,735	-		ABI39_RS17425	0.47	+1.6
4,400,781	+		ABI39_RS17425	0.50	+0.5
4,400,802	+		ABI39_RS17425	0.52	-0.1
4,400,828	+		ABI39_RS17425	0.54	+0.9
4,400,847	+		ABI39_RS17425	0.55	-2.9
4,400,848	-		ABI39_RS17425	0.55	-2.3
4,400,979	+		ABI39_RS17425	0.65	+0.4
4,401,073	-		ABI39_RS17425	0.72	-0.8
4,401,105	-		ABI39_RS17425	0.74	+1.3
4,401,105	-		ABI39_RS17425	0.74	+0.8
4,401,123	-		ABI39_RS17425	0.76	+0.4
4,401,130	-		ABI39_RS17425	0.76	-2.2
4,401,205	-		ABI39_RS17425	0.82	-0.1
4,401,224	+		ABI39_RS17425	0.83	+1.0
4,401,312	-		ABI39_RS17425	0.90	+1.0
4,401,320	+				-2.4
4,401,376	-				+1.4
4,401,388	-				+1.6
4,401,412	-				-2.0
4,401,477	+				-2.7
4,401,524	+				+0.7
4,401,567	+				+0.9
4,401,675	-		ABI39_RS17430	0.25	+1.8
4,401,804	-		ABI39_RS17430	0.43	+1.2
4,401,879	-		ABI39_RS17430	0.53	-0.6
4,401,926	+		ABI39_RS17430	0.60	-0.0
4,401,935	-		ABI39_RS17430	0.61	+1.4
4,401,942	+		ABI39_RS17430	0.62	-0.3
4,401,969	+		ABI39_RS17430	0.66	+0.2
4,402,032	+		ABI39_RS17430	0.74	+1.1
4,402,033	-		ABI39_RS17430	0.75	+1.7
4,402,033	-		ABI39_RS17430	0.75	-1.7
4,402,043	+		ABI39_RS17430	0.76	+0.2
4,402,060	-		ABI39_RS17430	0.78	+0.4
4,402,111	-		ABI39_RS17430	0.85	+0.7
4,402,157	+				+0.3
4,402,158	-				+0.4
4,402,158	-				-2.1
4,402,159	+				+1.0
4,402,159	+				-3.7
4,402,161	+				-0.3
4,402,161	+				+1.0
4,402,161	+				-1.7
4,402,161	+				-0.9
4,402,162	-				-0.8
4,402,162	-				+0.2
4,402,162	-				+0.6
4,402,162	-				+0.3
4,402,165	+				-1.8
4,402,166	-				-1.2
4,402,233	+				+0.7
4,402,285	-				-0.8
4,402,335	-				+1.4
4,402,429	+		ABI39_RS17435	0.12	-2.6
4,402,495	+		ABI39_RS17435	0.21	-1.1
4,402,667	-		ABI39_RS17435	0.45	-3.4
4,402,669	+		ABI39_RS17435	0.45	+0.8
4,402,670	-		ABI39_RS17435	0.45	+1.7
4,402,797	-		ABI39_RS17435	0.63	+1.5
4,402,810	-		ABI39_RS17435	0.65	+1.3
4,402,830	-		ABI39_RS17435	0.67	-1.0
4,403,202	+		ABI39_RS17440	0.19	+0.4