Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS16655

Experiment: Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
4,229,466	-		ABI39_RS16650	0.40	-0.2
4,229,582	+		ABI39_RS16650	0.61	+0.5
4,229,601	+		ABI39_RS16650	0.64	-1.0
4,229,695	+		ABI39_RS16650	0.82	-0.0
4,229,783	-				-0.9
4,229,794	-				+0.4
4,229,812	+				+0.5
4,229,984	+				+1.8
4,230,007	+				+1.2
4,230,065	-				-0.2
4,230,114	+				+1.4
4,230,125	-				-0.5
4,230,129	-				-0.1
4,230,129	-				+0.2
4,230,145	+				-2.7
4,230,329	+				+0.4
4,230,330	-				+0.8
4,230,334	-				-2.5
4,230,343	+				-0.2
4,230,344	+				+1.1
4,230,344	+				-0.3
4,230,382	+				-1.6
4,230,443	+		ABI39_RS16655	0.11	+1.7
4,230,446	+		ABI39_RS16655	0.12	+1.2
4,230,548	+		ABI39_RS16655	0.24	+0.1
4,230,562	+		ABI39_RS16655	0.25	+1.7
4,230,562	+		ABI39_RS16655	0.25	-2.3
4,230,563	-		ABI39_RS16655	0.25	+0.2
4,230,563	-		ABI39_RS16655	0.25	+0.9
4,230,564	+		ABI39_RS16655	0.26	+1.8
4,230,682	-		ABI39_RS16655	0.39	-0.8
4,230,705	-		ABI39_RS16655	0.42	+1.9
4,230,789	-		ABI39_RS16655	0.52	+0.7
4,230,800	+		ABI39_RS16655	0.53	+1.2
4,230,895	+		ABI39_RS16655	0.65	-0.0
4,230,900	+		ABI39_RS16655	0.65	+1.6
4,230,938	+		ABI39_RS16655	0.70	+1.7
4,231,074	-		ABI39_RS16655	0.86	+0.5
4,231,075	+		ABI39_RS16655	0.86	+0.6
4,231,076	-		ABI39_RS16655	0.86	+0.2
4,231,135	+				-1.5
4,231,148	+				+1.5
4,231,183	-				+0.8
4,231,184	+				+0.4
4,231,307	-				-0.9
4,231,339	-				+0.7
4,231,353	+				+0.6
4,231,436	-				+0.2
4,231,438	+				-0.6
4,231,475	-				+0.1
4,231,709	+				+0.8
4,231,709	+				-2.1
4,231,722	+				-1.8
4,231,809	-				-3.0
4,231,896	+				+0.4
4,231,922	-				-1.4
4,231,947	+				+0.7
4,231,947	+				-0.9
4,231,952	-				-2.7
4,232,131	+				-1.1