Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS08005

Experiment: Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
2,153,884	-				-1.2
2,153,910	-				-0.2
2,153,911	+				+0.9
2,153,913	+				-0.7
2,153,926	+				+0.3
2,154,000	+				+0.3
2,154,000	+				-0.3
2,154,075	-		ABI39_RS08000	0.17	+0.9
2,154,162	-		ABI39_RS08000	0.26	+1.2
2,154,237	-		ABI39_RS08000	0.34	+0.3
2,154,396	-		ABI39_RS08000	0.51	-3.1
2,154,422	+		ABI39_RS08000	0.54	+0.1
2,154,423	-		ABI39_RS08000	0.54	-0.3
2,154,423	-		ABI39_RS08000	0.54	+0.7
2,154,428	-		ABI39_RS08000	0.54	-0.3
2,154,516	+		ABI39_RS08000	0.64	-0.1
2,154,561	+		ABI39_RS08000	0.68	+1.2
2,154,787	-				+0.4
2,154,888	+				+0.4
2,155,042	+		ABI39_RS08005	0.12	-1.3
2,155,078	-		ABI39_RS08005	0.14	-3.3
2,155,088	+		ABI39_RS08005	0.15	-0.5
2,155,088	+		ABI39_RS08005	0.15	+0.9
2,155,173	+		ABI39_RS08005	0.21	-0.1
2,155,189	-		ABI39_RS08005	0.22	+0.5
2,155,189	-		ABI39_RS08005	0.22	-0.5
2,155,271	+		ABI39_RS08005	0.28	-1.2
2,155,290	+		ABI39_RS08005	0.29	-0.2
2,155,293	-		ABI39_RS08005	0.29	+0.7
2,155,293	-		ABI39_RS08005	0.29	+0.4
2,155,294	+		ABI39_RS08005	0.29	-0.2
2,155,325	-		ABI39_RS08005	0.32	+0.4
2,155,338	+		ABI39_RS08005	0.32	-1.8
2,155,390	-		ABI39_RS08005	0.36	+0.1
2,155,390	-		ABI39_RS08005	0.36	+0.0
2,155,392	-		ABI39_RS08005	0.36	+1.0
2,155,392	-		ABI39_RS08005	0.36	-0.8
2,155,394	+		ABI39_RS08005	0.36	+0.0
2,155,396	+		ABI39_RS08005	0.37	-0.7
2,155,399	+		ABI39_RS08005	0.37	-0.6
2,155,450	-		ABI39_RS08005	0.40	+0.6
2,155,453	+		ABI39_RS08005	0.41	-0.3
2,155,473	-		ABI39_RS08005	0.42	-4.3
2,155,494	+		ABI39_RS08005	0.44	-1.2
2,155,494	+		ABI39_RS08005	0.44	+0.5
2,155,497	-		ABI39_RS08005	0.44	-1.9
2,155,596	-		ABI39_RS08005	0.51	+0.8
2,155,606	-		ABI39_RS08005	0.51	+1.5
2,155,613	+		ABI39_RS08005	0.52	-1.3
2,155,615	+		ABI39_RS08005	0.52	-1.0
2,155,640	-		ABI39_RS08005	0.54	-3.4
2,155,674	+		ABI39_RS08005	0.56	+1.1
2,155,675	-		ABI39_RS08005	0.56	-1.9
2,155,809	-		ABI39_RS08005	0.66	+1.3
2,155,850	-		ABI39_RS08005	0.69	-4.6
2,155,857	-		ABI39_RS08005	0.69	+0.1
2,155,888	+		ABI39_RS08005	0.71	-0.8
2,155,889	-		ABI39_RS08005	0.71	-1.3
2,155,903	-		ABI39_RS08005	0.72	-0.5
2,155,919	+		ABI39_RS08005	0.74	-0.8
2,155,919	+		ABI39_RS08005	0.74	-0.9
2,155,923	-		ABI39_RS08005	0.74	+0.0
2,155,964	+		ABI39_RS08005	0.77	-1.0
2,156,100	-		ABI39_RS08005	0.86	+1.4
2,156,181	-				+0.3
2,156,184	-				+1.1
2,156,187	-				-2.3
2,156,207	-				+0.2
2,156,288	-				-0.2
2,156,288	-				-0.1
2,156,292	-				-0.7
2,156,339	-				+1.7
2,156,433	+				+0.2
2,156,445	-				-3.6
2,156,456	+				+0.7
2,156,502	-				+1.2
2,156,605	-		ABI39_RS08010	0.15	+1.0
2,156,624	+		ABI39_RS08010	0.17	-1.8
2,156,624	+		ABI39_RS08010	0.17	+0.4
2,156,660	+		ABI39_RS08010	0.21	+0.1
2,156,666	-		ABI39_RS08010	0.22	+2.1
2,156,713	-		ABI39_RS08010	0.28	-0.4
2,156,765	-		ABI39_RS08010	0.34	+1.3
2,156,768	+		ABI39_RS08010	0.34	+0.6
2,156,851	-		ABI39_RS08010	0.44	+1.3
2,156,891	+		ABI39_RS08010	0.49	-1.8
2,156,895	+		ABI39_RS08010	0.49	-2.1
2,156,928	-		ABI39_RS08010	0.53	-0.2
2,157,078	+		ABI39_RS08010	0.71	+0.3
2,157,081	+		ABI39_RS08010	0.71	-1.1
2,157,184	+		ABI39_RS08010	0.84	+1.0
2,157,233	-		ABI39_RS08010	0.89	-1.3
2,157,233	-		ABI39_RS08010	0.89	-0.7
2,157,271	-				-0.3