Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS05725

Experiment: Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
1,584,332	-		ABI39_RS05720	0.65	-2.0
1,584,370	-		ABI39_RS05720	0.67	+1.6
1,584,481	+		ABI39_RS05720	0.71	-0.1
1,584,562	+		ABI39_RS05720	0.75	+0.1
1,584,568	+		ABI39_RS05720	0.75	-2.1
1,584,569	-		ABI39_RS05720	0.75	-0.9
1,584,569	-		ABI39_RS05720	0.75	+0.3
1,584,569	-		ABI39_RS05720	0.75	-0.7
1,584,713	+		ABI39_RS05720	0.81	+0.6
1,584,714	-		ABI39_RS05720	0.81	+0.3
1,584,784	+		ABI39_RS05720	0.84	+0.5
1,584,784	+		ABI39_RS05720	0.84	-0.4
1,584,785	-		ABI39_RS05720	0.84	+0.2
1,584,803	-		ABI39_RS05720	0.85	+1.2
1,584,804	+		ABI39_RS05720	0.85	+0.6
1,584,823	+		ABI39_RS05720	0.85	-1.1
1,584,945	-				-2.5
1,584,945	-				+2.5
1,584,946	+				-0.8
1,585,044	+				-2.7
1,585,182	+				-2.3
1,585,256	-				-1.6
1,585,398	-				-0.4
1,585,628	+				+0.7
1,585,841	+		ABI39_RS05725	0.13	+0.2
1,585,846	-		ABI39_RS05725	0.13	-0.9
1,586,008	+		ABI39_RS05725	0.17	+0.3
1,586,009	-		ABI39_RS05725	0.17	-3.0
1,586,043	+		ABI39_RS05725	0.18	+0.8
1,586,055	-		ABI39_RS05725	0.18	+0.6
1,586,184	-		ABI39_RS05725	0.22	-3.2
1,586,184	-		ABI39_RS05725	0.22	-0.4
1,586,217	-		ABI39_RS05725	0.23	-1.1
1,586,255	+		ABI39_RS05725	0.23	+0.5
1,586,323	-		ABI39_RS05725	0.25	+0.4
1,586,372	+		ABI39_RS05725	0.26	-0.1
1,586,381	+		ABI39_RS05725	0.27	-4.4
1,586,382	-		ABI39_RS05725	0.27	+0.7
1,586,385	+		ABI39_RS05725	0.27	-1.4
1,586,420	+		ABI39_RS05725	0.28	+0.3
1,586,439	-		ABI39_RS05725	0.28	-0.1
1,586,443	+		ABI39_RS05725	0.28	-1.7
1,586,446	-		ABI39_RS05725	0.28	-1.7
1,586,451	+		ABI39_RS05725	0.28	+0.3
1,586,465	+		ABI39_RS05725	0.29	+1.2
1,586,479	+		ABI39_RS05725	0.29	+1.4
1,586,480	-		ABI39_RS05725	0.29	+1.9
1,586,505	-		ABI39_RS05725	0.30	-1.0
1,586,507	-		ABI39_RS05725	0.30	-3.1
1,586,563	-		ABI39_RS05725	0.31	-3.8
1,586,624	+		ABI39_RS05725	0.33	-0.1
1,586,631	+		ABI39_RS05725	0.33	+0.7
1,586,646	-		ABI39_RS05725	0.33	-1.9
1,586,829	+		ABI39_RS05725	0.38	-0.1
1,586,923	+		ABI39_RS05725	0.40	-0.2
1,586,927	+		ABI39_RS05725	0.40	+0.2
1,586,942	-		ABI39_RS05725	0.41	-2.3
1,586,942	-		ABI39_RS05725	0.41	-1.0
1,586,969	-		ABI39_RS05725	0.41	-0.6
1,586,977	+		ABI39_RS05725	0.42	-0.2
1,587,107	-		ABI39_RS05725	0.45	-1.5
1,587,136	+		ABI39_RS05725	0.46	-3.3
1,587,150	-		ABI39_RS05725	0.46	-0.8
1,587,153	+		ABI39_RS05725	0.46	+0.3
1,587,154	-		ABI39_RS05725	0.46	+1.8
1,587,203	+		ABI39_RS05725	0.47	+1.3
1,587,295	-		ABI39_RS05725	0.50	+0.3
1,587,403	-		ABI39_RS05725	0.52	-0.4
1,587,403	-		ABI39_RS05725	0.52	-3.7
1,587,463	-		ABI39_RS05725	0.54	+2.0
1,587,464	+		ABI39_RS05725	0.54	+0.3
1,587,465	-		ABI39_RS05725	0.54	+0.6
1,587,506	-		ABI39_RS05725	0.55	-0.8
1,587,510	-		ABI39_RS05725	0.55	-1.0
1,587,538	-		ABI39_RS05725	0.56	+1.2
1,587,754	+		ABI39_RS05725	0.61	+1.0
1,587,785	+		ABI39_RS05725	0.62	+0.3
1,587,785	+		ABI39_RS05725	0.62	-0.2
1,587,816	+		ABI39_RS05725	0.63	-2.2
1,587,818	+		ABI39_RS05725	0.63	+1.3
1,587,818	+		ABI39_RS05725	0.63	-1.1
1,587,822	-		ABI39_RS05725	0.63	+1.0
1,587,880	-		ABI39_RS05725	0.64	+1.3
1,587,945	-		ABI39_RS05725	0.66	+2.6
1,588,116	+		ABI39_RS05725	0.70	-0.7
1,588,152	-		ABI39_RS05725	0.71	+1.2
1,588,152	-		ABI39_RS05725	0.71	-2.0
1,588,180	+		ABI39_RS05725	0.72	+0.3
1,588,251	-		ABI39_RS05725	0.74	+1.1
1,588,299	-		ABI39_RS05725	0.75	-1.2
1,588,329	-		ABI39_RS05725	0.76	-1.5
1,588,329	-		ABI39_RS05725	0.76	+0.2
1,588,342	+		ABI39_RS05725	0.76	+0.7
1,588,342	+		ABI39_RS05725	0.76	+0.3
1,588,343	-		ABI39_RS05725	0.76	-0.6
1,588,343	-		ABI39_RS05725	0.76	-3.8
1,588,419	+		ABI39_RS05725	0.78	+0.5
1,588,420	-		ABI39_RS05725	0.78	+1.0
1,588,453	+		ABI39_RS05725	0.79	-1.3
1,588,495	+		ABI39_RS05725	0.80	-2.6
1,588,505	+		ABI39_RS05725	0.80	+0.2
1,588,508	+		ABI39_RS05725	0.80	-0.6
1,588,563	-		ABI39_RS05725	0.81	-0.8
1,588,566	-		ABI39_RS05725	0.81	-3.4
1,588,566	-		ABI39_RS05725	0.81	+0.3
1,588,618	-		ABI39_RS05725	0.83	-0.5
1,588,646	-		ABI39_RS05725	0.83	-1.2
1,588,671	-		ABI39_RS05725	0.84	-1.2
1,588,671	-		ABI39_RS05725	0.84	+0.9
1,588,674	-		ABI39_RS05725	0.84	+0.1
1,588,675	+		ABI39_RS05725	0.84	-0.6
1,588,710	-		ABI39_RS05725	0.85	-0.1
1,588,873	+		ABI39_RS05725	0.89	+0.6
1,588,873	+		ABI39_RS05725	0.89	-3.8
1,588,876	-		ABI39_RS05725	0.89	+0.2
1,588,927	+				-1.6
1,588,928	-				+0.4
1,589,001	+				-0.3
1,589,030	-				+0.2
1,589,064	-				-0.2
1,589,151	+				+0.8
1,589,179	+				+0.0
1,589,232	-				-3.6
1,589,232	-				-3.7
1,589,235	+				-0.6
1,589,260	+				-0.8
1,589,281	-				+1.0
1,589,297	-				-0.2
1,589,303	+				-0.3
1,589,304	-				-1.8
1,589,304	-				-1.6
1,589,310	+				+0.5
1,589,316	+				+1.3
1,589,396	-				-0.0
1,589,428	+				-0.1
1,589,428	+				-0.7
1,589,428	+				+0.1
1,589,450	-				-2.5
1,589,488	+				-0.8
1,589,542	-				-3.7
1,589,548	-				-1.2
1,589,555	-				-0.7
1,589,631	+				-0.0