Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS04515

Experiment: Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
1,270,901	-		ABI39_RS04510	0.13	-2.1
1,270,961	+		ABI39_RS04510	0.19	+0.6
1,270,987	+		ABI39_RS04510	0.22	-0.8
1,271,044	-		ABI39_RS04510	0.28	+0.4
1,271,055	-		ABI39_RS04510	0.29	+1.8
1,271,056	+		ABI39_RS04510	0.29	-2.7
1,271,061	+		ABI39_RS04510	0.30	+0.1
1,271,102	+		ABI39_RS04510	0.34	-2.2
1,271,156	+		ABI39_RS04510	0.39	-1.6
1,271,284	+		ABI39_RS04510	0.52	+0.1
1,271,288	+		ABI39_RS04510	0.53	-0.0
1,271,364	-		ABI39_RS04510	0.60	-0.7
1,271,501	-		ABI39_RS04510	0.74	+0.1
1,271,501	-		ABI39_RS04510	0.74	+0.1
1,271,525	+		ABI39_RS04510	0.77	+0.1
1,271,533	-		ABI39_RS04510	0.78	-0.2
1,271,618	+		ABI39_RS04510	0.86	-0.8
1,271,621	+		ABI39_RS04510	0.87	-1.3
1,271,640	-		ABI39_RS04510	0.89	-0.4
1,271,642	+		ABI39_RS04510	0.89	+0.3
1,271,642	+		ABI39_RS04510	0.89	-2.7
1,271,705	+				-2.4
1,271,714	-				-0.1
1,271,736	-				-1.1
1,271,781	+				-0.2
1,271,781	+				-3.8
1,271,782	-				-4.3
1,271,784	-				+0.3
1,271,947	+				+2.5
1,271,951	-				-3.7
1,272,208	+		ABI39_RS04515	0.24	+0.7
1,272,208	+		ABI39_RS04515	0.24	+0.2
1,272,392	+		ABI39_RS04515	0.34	+2.2
1,273,232	-		ABI39_RS04515	0.81	-0.6
1,273,232	-		ABI39_RS04515	0.81	+0.7
1,273,293	-		ABI39_RS04515	0.85	-0.5
1,273,293	-		ABI39_RS04515	0.85	-0.2
1,273,408	+				+0.3
1,273,425	-				+0.5
1,273,561	-				-3.3
1,273,607	-				-0.4
1,273,719	+				+0.4
1,273,727	-				+0.2
1,273,733	+				-1.3
1,273,734	-				+0.2
1,273,735	+				+0.9
1,273,738	+				-1.5
1,273,895	+		ABI39_RS04520	0.17	-1.8
1,273,895	+		ABI39_RS04520	0.17	-2.4
1,273,896	-		ABI39_RS04520	0.17	-2.4
1,273,998	+		ABI39_RS04520	0.25	+0.7
1,274,020	-		ABI39_RS04520	0.26	-0.3
1,274,020	-		ABI39_RS04520	0.26	-0.3
1,274,063	+		ABI39_RS04520	0.30	+1.2
1,274,063	+		ABI39_RS04520	0.30	+0.6
1,274,153	-		ABI39_RS04520	0.37	-0.2
1,274,153	-		ABI39_RS04520	0.37	+0.1
1,274,438	-		ABI39_RS04520	0.58	-3.3
1,274,438	-		ABI39_RS04520	0.58	-1.4
1,274,441	+		ABI39_RS04520	0.59	-0.7
1,274,442	-		ABI39_RS04520	0.59	+1.0
1,274,442	-		ABI39_RS04520	0.59	+2.5