Experiment: Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS00895 and ABI39_RS00900 are separated by 93 nucleotides ABI39_RS00900 and ABI39_RS00905 are separated by 257 nucleotides
ABI39_RS00895: ABI39_RS00895 - PD40 domain-containing protein, at 280,615 to 281,940
_RS00895
ABI39_RS00900: ABI39_RS00900 - polysaccharide deacetylase family protein, at 282,034 to 283,011
_RS00900
ABI39_RS00905: ABI39_RS00905 - RagB/SusD family nutrient uptake outer membrane protein, at 283,269 to 285,581
_RS00905
Position (kb) 282
283
284 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 281.075 kb on - strand, within ABI39_RS00895 at 281.116 kb on - strand, within ABI39_RS00895 at 281.186 kb on - strand, within ABI39_RS00895 at 281.480 kb on - strand, within ABI39_RS00895 at 281.513 kb on + strand, within ABI39_RS00895 at 281.513 kb on + strand, within ABI39_RS00895 at 281.513 kb on + strand, within ABI39_RS00895 at 281.514 kb on - strand, within ABI39_RS00895 at 281.604 kb on + strand, within ABI39_RS00895 at 281.734 kb on + strand, within ABI39_RS00895 at 281.811 kb on + strand at 281.840 kb on - strand at 281.916 kb on + strand at 281.919 kb on + strand at 281.973 kb on + strand at 282.014 kb on + strand at 282.023 kb on - strand at 282.062 kb on + strand at 282.160 kb on - strand, within ABI39_RS00900 at 282.272 kb on - strand, within ABI39_RS00900 at 282.418 kb on + strand, within ABI39_RS00900 at 282.418 kb on + strand, within ABI39_RS00900 at 282.421 kb on - strand, within ABI39_RS00900 at 282.451 kb on - strand, within ABI39_RS00900 at 282.509 kb on - strand, within ABI39_RS00900 at 282.509 kb on - strand, within ABI39_RS00900 at 282.514 kb on + strand, within ABI39_RS00900 at 282.559 kb on + strand, within ABI39_RS00900 at 282.596 kb on + strand, within ABI39_RS00900 at 282.597 kb on - strand, within ABI39_RS00900 at 282.610 kb on + strand, within ABI39_RS00900 at 282.613 kb on - strand, within ABI39_RS00900 at 282.642 kb on + strand, within ABI39_RS00900 at 282.861 kb on - strand, within ABI39_RS00900 at 282.889 kb on - strand, within ABI39_RS00900 at 282.961 kb on + strand at 283.022 kb on + strand at 283.030 kb on - strand at 283.084 kb on + strand at 283.085 kb on - strand at 283.085 kb on - strand at 283.124 kb on + strand at 283.225 kb on + strand at 283.226 kb on - strand at 283.267 kb on - strand at 283.339 kb on - strand at 283.374 kb on - strand at 283.375 kb on + strand at 283.385 kb on + strand at 283.410 kb on - strand at 283.484 kb on - strand at 283.489 kb on - strand at 283.491 kb on - strand at 283.532 kb on - strand, within ABI39_RS00905 at 283.594 kb on - strand, within ABI39_RS00905 at 283.598 kb on + strand, within ABI39_RS00905 at 283.686 kb on - strand, within ABI39_RS00905 at 283.692 kb on - strand, within ABI39_RS00905 at 283.855 kb on + strand, within ABI39_RS00905 at 283.873 kb on - strand, within ABI39_RS00905 at 283.918 kb on + strand, within ABI39_RS00905 at 284.005 kb on + strand, within ABI39_RS00905 at 284.005 kb on + strand, within ABI39_RS00905
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) remove 281,075 - ABI39_RS00895 0.35 +0.6 281,116 - ABI39_RS00895 0.38 +0.8 281,186 - ABI39_RS00895 0.43 -2.0 281,480 - ABI39_RS00895 0.65 +0.5 281,513 + ABI39_RS00895 0.68 -0.4 281,513 + ABI39_RS00895 0.68 +0.5 281,513 + ABI39_RS00895 0.68 -2.0 281,514 - ABI39_RS00895 0.68 +1.6 281,604 + ABI39_RS00895 0.75 +0.8 281,734 + ABI39_RS00895 0.84 -1.6 281,811 + +0.9 281,840 - +0.7 281,916 + -0.0 281,919 + -2.8 281,973 + -0.1 282,014 + +1.2 282,023 - -0.5 282,062 + +0.8 282,160 - ABI39_RS00900 0.13 -0.6 282,272 - ABI39_RS00900 0.24 -3.9 282,418 + ABI39_RS00900 0.39 +1.0 282,418 + ABI39_RS00900 0.39 -0.5 282,421 - ABI39_RS00900 0.40 -2.3 282,451 - ABI39_RS00900 0.43 -2.8 282,509 - ABI39_RS00900 0.49 +1.0 282,509 - ABI39_RS00900 0.49 -2.9 282,514 + ABI39_RS00900 0.49 +0.5 282,559 + ABI39_RS00900 0.54 -0.2 282,596 + ABI39_RS00900 0.57 -2.4 282,597 - ABI39_RS00900 0.58 -2.2 282,610 + ABI39_RS00900 0.59 -2.2 282,613 - ABI39_RS00900 0.59 -0.0 282,642 + ABI39_RS00900 0.62 -1.9 282,861 - ABI39_RS00900 0.85 -0.4 282,889 - ABI39_RS00900 0.87 +0.1 282,961 + +0.6 283,022 + -0.8 283,030 - -1.7 283,084 + -3.1 283,085 - -1.4 283,085 - +1.0 283,124 + +0.4 283,225 + +0.2 283,226 - -0.3 283,267 - -1.5 283,339 - +2.5 283,374 - +0.0 283,375 + -2.0 283,385 + -1.1 283,410 - +0.1 283,484 - -0.7 283,489 - +1.6 283,491 - -0.6 283,532 - ABI39_RS00905 0.11 -1.0 283,594 - ABI39_RS00905 0.14 +0.2 283,598 + ABI39_RS00905 0.14 +1.5 283,686 - ABI39_RS00905 0.18 +0.5 283,692 - ABI39_RS00905 0.18 -0.8 283,855 + ABI39_RS00905 0.25 +0.5 283,873 - ABI39_RS00905 0.26 -0.6 283,918 + ABI39_RS00905 0.28 -2.4 284,005 + ABI39_RS00905 0.32 +1.9 284,005 + ABI39_RS00905 0.32 -1.8
Or see this region's nucleotide sequence