Experiment: Galactan from Potato; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS21315 and ABI39_RS21320 overlap by 4 nucleotides ABI39_RS21320 and ABI39_RS21325 are separated by 1 nucleotides
ABI39_RS21315: ABI39_RS21315 - sialate O-acetylesterase, at 5,255,352 to 5,257,415
_RS21315
ABI39_RS21320: ABI39_RS21320 - sialate O-acetylesterase, at 5,257,412 to 5,258,077
_RS21320
ABI39_RS21325: ABI39_RS21325 - family 20 glycosylhydrolase, at 5,258,079 to 5,260,085
_RS21325
Position (kb) 5257
5258
5259 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5256.569 kb on + strand, within ABI39_RS21315 at 5256.787 kb on + strand, within ABI39_RS21315 at 5256.788 kb on - strand, within ABI39_RS21315 at 5256.788 kb on - strand, within ABI39_RS21315 at 5256.864 kb on + strand, within ABI39_RS21315 at 5256.865 kb on - strand, within ABI39_RS21315 at 5257.135 kb on - strand, within ABI39_RS21315 at 5257.241 kb on + strand at 5257.308 kb on + strand at 5257.333 kb on - strand at 5257.390 kb on - strand at 5257.398 kb on + strand at 5257.489 kb on + strand, within ABI39_RS21320 at 5257.492 kb on + strand, within ABI39_RS21320 at 5257.495 kb on - strand, within ABI39_RS21320 at 5257.496 kb on + strand, within ABI39_RS21320 at 5257.497 kb on - strand, within ABI39_RS21320 at 5257.552 kb on - strand, within ABI39_RS21320 at 5257.625 kb on - strand, within ABI39_RS21320 at 5257.625 kb on - strand, within ABI39_RS21320 at 5257.836 kb on + strand, within ABI39_RS21320 at 5257.837 kb on - strand, within ABI39_RS21320 at 5257.946 kb on - strand, within ABI39_RS21320 at 5257.995 kb on + strand, within ABI39_RS21320 at 5258.007 kb on + strand, within ABI39_RS21320 at 5258.008 kb on - strand, within ABI39_RS21320 at 5258.061 kb on - strand at 5258.081 kb on - strand at 5258.102 kb on - strand at 5258.290 kb on - strand, within ABI39_RS21325 at 5258.375 kb on - strand, within ABI39_RS21325 at 5258.480 kb on + strand, within ABI39_RS21325 at 5258.557 kb on + strand, within ABI39_RS21325 at 5258.590 kb on + strand, within ABI39_RS21325 at 5258.590 kb on + strand, within ABI39_RS21325 at 5258.591 kb on - strand, within ABI39_RS21325 at 5258.594 kb on + strand, within ABI39_RS21325 at 5258.594 kb on + strand, within ABI39_RS21325 at 5258.814 kb on + strand, within ABI39_RS21325 at 5258.957 kb on + strand, within ABI39_RS21325 at 5259.018 kb on + strand, within ABI39_RS21325
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato; filtered 2.5 mg/ml (C) remove 5,256,569 + ABI39_RS21315 0.59 -0.2 5,256,787 + ABI39_RS21315 0.70 -0.6 5,256,788 - ABI39_RS21315 0.70 +0.5 5,256,788 - ABI39_RS21315 0.70 +0.1 5,256,864 + ABI39_RS21315 0.73 +1.6 5,256,865 - ABI39_RS21315 0.73 +0.8 5,257,135 - ABI39_RS21315 0.86 -0.8 5,257,241 + +0.1 5,257,308 + -0.5 5,257,333 - -2.0 5,257,390 - -1.0 5,257,398 + -0.4 5,257,489 + ABI39_RS21320 0.12 +1.6 5,257,492 + ABI39_RS21320 0.12 -0.2 5,257,495 - ABI39_RS21320 0.12 -1.4 5,257,496 + ABI39_RS21320 0.13 +0.1 5,257,497 - ABI39_RS21320 0.13 +1.0 5,257,552 - ABI39_RS21320 0.21 +0.1 5,257,625 - ABI39_RS21320 0.32 +0.6 5,257,625 - ABI39_RS21320 0.32 -0.0 5,257,836 + ABI39_RS21320 0.64 +1.9 5,257,837 - ABI39_RS21320 0.64 -1.4 5,257,946 - ABI39_RS21320 0.80 +0.8 5,257,995 + ABI39_RS21320 0.88 +1.2 5,258,007 + ABI39_RS21320 0.89 +0.8 5,258,008 - ABI39_RS21320 0.89 -1.0 5,258,061 - -1.3 5,258,081 - -1.2 5,258,102 - +0.4 5,258,290 - ABI39_RS21325 0.11 +1.1 5,258,375 - ABI39_RS21325 0.15 +0.4 5,258,480 + ABI39_RS21325 0.20 +0.1 5,258,557 + ABI39_RS21325 0.24 +0.6 5,258,590 + ABI39_RS21325 0.25 -1.1 5,258,590 + ABI39_RS21325 0.25 -0.8 5,258,591 - ABI39_RS21325 0.26 -2.3 5,258,594 + ABI39_RS21325 0.26 +1.3 5,258,594 + ABI39_RS21325 0.26 -0.2 5,258,814 + ABI39_RS21325 0.37 +1.7 5,258,957 + ABI39_RS21325 0.44 -0.1 5,259,018 + ABI39_RS21325 0.47 -0.9
Or see this region's nucleotide sequence