Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS21300

Experiment: Galactan from Potato; filtered 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS21295 and ABI39_RS21300 overlap by 4 nucleotidesABI39_RS21300 and ABI39_RS21305 are separated by 94 nucleotides ABI39_RS21295: ABI39_RS21295 - family 20 glycosylhydrolase, at 5,247,144 to 5,249,198 _RS21295 ABI39_RS21300: ABI39_RS21300 - cyclically-permuted mutarotase family protein, at 5,249,195 to 5,250,322 _RS21300 ABI39_RS21305: ABI39_RS21305 - family 20 glycosylhydrolase, at 5,250,417 to 5,252,741 _RS21305 Position (kb) 5249 5250 5251Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5248.248 kb on + strand, within ABI39_RS21295at 5248.249 kb on - strand, within ABI39_RS21295at 5248.250 kb on + strand, within ABI39_RS21295at 5248.257 kb on - strand, within ABI39_RS21295at 5248.562 kb on + strand, within ABI39_RS21295at 5248.672 kb on + strand, within ABI39_RS21295at 5248.739 kb on + strand, within ABI39_RS21295at 5248.818 kb on - strand, within ABI39_RS21295at 5248.818 kb on - strand, within ABI39_RS21295at 5248.818 kb on - strand, within ABI39_RS21295at 5248.911 kb on + strand, within ABI39_RS21295at 5248.946 kb on + strand, within ABI39_RS21295at 5248.950 kb on - strand, within ABI39_RS21295at 5248.950 kb on - strand, within ABI39_RS21295at 5249.002 kb on + strandat 5249.040 kb on + strandat 5249.040 kb on + strandat 5249.044 kb on + strandat 5249.263 kb on + strandat 5249.263 kb on + strandat 5249.412 kb on + strand, within ABI39_RS21300at 5249.431 kb on + strand, within ABI39_RS21300at 5249.484 kb on - strand, within ABI39_RS21300at 5249.596 kb on + strand, within ABI39_RS21300at 5249.597 kb on - strand, within ABI39_RS21300at 5249.660 kb on - strand, within ABI39_RS21300at 5249.767 kb on - strand, within ABI39_RS21300at 5249.842 kb on + strand, within ABI39_RS21300at 5249.846 kb on - strand, within ABI39_RS21300at 5249.850 kb on - strand, within ABI39_RS21300at 5250.061 kb on + strand, within ABI39_RS21300at 5250.062 kb on - strand, within ABI39_RS21300at 5250.062 kb on - strand, within ABI39_RS21300at 5250.063 kb on + strand, within ABI39_RS21300at 5250.064 kb on - strand, within ABI39_RS21300at 5250.065 kb on + strand, within ABI39_RS21300at 5250.065 kb on + strand, within ABI39_RS21300at 5250.165 kb on + strand, within ABI39_RS21300at 5250.166 kb on - strand, within ABI39_RS21300at 5250.167 kb on + strand, within ABI39_RS21300at 5250.233 kb on + strandat 5250.287 kb on + strandat 5250.303 kb on + strandat 5250.308 kb on + strandat 5250.423 kb on + strandat 5250.556 kb on + strandat 5250.558 kb on + strandat 5250.607 kb on - strandat 5250.696 kb on - strand, within ABI39_RS21305at 5250.788 kb on - strand, within ABI39_RS21305at 5250.821 kb on + strand, within ABI39_RS21305at 5250.933 kb on - strand, within ABI39_RS21305at 5250.990 kb on - strand, within ABI39_RS21305at 5251.031 kb on + strand, within ABI39_RS21305at 5251.032 kb on - strand, within ABI39_RS21305at 5251.032 kb on - strand, within ABI39_RS21305at 5251.033 kb on + strand, within ABI39_RS21305at 5251.037 kb on - strand, within ABI39_RS21305at 5251.037 kb on - strand, within ABI39_RS21305at 5251.067 kb on + strand, within ABI39_RS21305at 5251.067 kb on + strand, within ABI39_RS21305at 5251.135 kb on + strand, within ABI39_RS21305at 5251.136 kb on - strand, within ABI39_RS21305at 5251.159 kb on - strand, within ABI39_RS21305at 5251.169 kb on + strand, within ABI39_RS21305at 5251.290 kb on - strand, within ABI39_RS21305at 5251.292 kb on - strand, within ABI39_RS21305at 5251.292 kb on - strand, within ABI39_RS21305

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Per-strain Table

Position Strand Gene LocusTag Fraction Galactan from Potato; filtered 2.5 mg/ml (C)
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5,248,248 + ABI39_RS21295 0.54 +0.7
5,248,249 - ABI39_RS21295 0.54 -1.8
5,248,250 + ABI39_RS21295 0.54 -1.3
5,248,257 - ABI39_RS21295 0.54 -1.8
5,248,562 + ABI39_RS21295 0.69 -1.0
5,248,672 + ABI39_RS21295 0.74 -2.8
5,248,739 + ABI39_RS21295 0.78 +1.1
5,248,818 - ABI39_RS21295 0.81 -1.1
5,248,818 - ABI39_RS21295 0.81 -0.9
5,248,818 - ABI39_RS21295 0.81 +0.6
5,248,911 + ABI39_RS21295 0.86 -0.9
5,248,946 + ABI39_RS21295 0.88 +0.1
5,248,950 - ABI39_RS21295 0.88 +0.2
5,248,950 - ABI39_RS21295 0.88 -1.5
5,249,002 + +0.6
5,249,040 + -0.3
5,249,040 + -0.8
5,249,044 + -2.0
5,249,263 + -0.3
5,249,263 + -0.4
5,249,412 + ABI39_RS21300 0.19 -1.0
5,249,431 + ABI39_RS21300 0.21 -1.1
5,249,484 - ABI39_RS21300 0.26 -0.5
5,249,596 + ABI39_RS21300 0.36 +0.0
5,249,597 - ABI39_RS21300 0.36 -1.7
5,249,660 - ABI39_RS21300 0.41 +1.2
5,249,767 - ABI39_RS21300 0.51 -0.3
5,249,842 + ABI39_RS21300 0.57 -0.5
5,249,846 - ABI39_RS21300 0.58 -0.9
5,249,850 - ABI39_RS21300 0.58 -0.7
5,250,061 + ABI39_RS21300 0.77 -0.6
5,250,062 - ABI39_RS21300 0.77 -0.8
5,250,062 - ABI39_RS21300 0.77 +0.1
5,250,063 + ABI39_RS21300 0.77 -0.4
5,250,064 - ABI39_RS21300 0.77 -0.5
5,250,065 + ABI39_RS21300 0.77 -1.3
5,250,065 + ABI39_RS21300 0.77 -0.2
5,250,165 + ABI39_RS21300 0.86 -1.3
5,250,166 - ABI39_RS21300 0.86 +0.4
5,250,167 + ABI39_RS21300 0.86 -1.7
5,250,233 + -0.7
5,250,287 + +0.9
5,250,303 + -1.0
5,250,308 + -1.7
5,250,423 + -0.5
5,250,556 + +0.4
5,250,558 + -0.4
5,250,607 - +0.1
5,250,696 - ABI39_RS21305 0.12 -0.4
5,250,788 - ABI39_RS21305 0.16 +0.8
5,250,821 + ABI39_RS21305 0.17 +3.2
5,250,933 - ABI39_RS21305 0.22 -0.1
5,250,990 - ABI39_RS21305 0.25 -0.2
5,251,031 + ABI39_RS21305 0.26 -0.3
5,251,032 - ABI39_RS21305 0.26 +0.1
5,251,032 - ABI39_RS21305 0.26 +0.1
5,251,033 + ABI39_RS21305 0.26 +1.0
5,251,037 - ABI39_RS21305 0.27 -0.2
5,251,037 - ABI39_RS21305 0.27 -0.9
5,251,067 + ABI39_RS21305 0.28 -1.3
5,251,067 + ABI39_RS21305 0.28 +0.4
5,251,135 + ABI39_RS21305 0.31 -0.6
5,251,136 - ABI39_RS21305 0.31 +0.7
5,251,159 - ABI39_RS21305 0.32 -0.5
5,251,169 + ABI39_RS21305 0.32 +0.4
5,251,290 - ABI39_RS21305 0.38 -0.2
5,251,292 - ABI39_RS21305 0.38 +0.7
5,251,292 - ABI39_RS21305 0.38 +0.0

Or see this region's nucleotide sequence