Experiment: Galactan from Potato; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS20760 and ABI39_RS20765 are separated by 72 nucleotides ABI39_RS20765 and ABI39_RS20775 are separated by 261 nucleotides ABI39_RS20775 and ABI39_RS20780 overlap by 8 nucleotides
ABI39_RS20760: ABI39_RS20760 - IS66 family transposase, at 5,119,523 to 5,121,316
_RS20760
ABI39_RS20765: ABI39_RS20765 - IS66 family insertion sequence element accessory protein TnpB, at 5,121,389 to 5,121,898
_RS20765
ABI39_RS20775: ABI39_RS20775 - lipopolysaccharide biosynthesis protein, at 5,122,160 to 5,122,744
_RS20775
ABI39_RS20780: ABI39_RS20780 - glycosyltransferase family 4 protein, at 5,122,737 to 5,123,849
_RS20780
Position (kb) 5122
5123 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5121.168 kb on - strand at 5121.192 kb on + strand at 5121.197 kb on + strand at 5121.258 kb on + strand at 5121.293 kb on - strand at 5121.691 kb on - strand, within ABI39_RS20765 at 5121.725 kb on - strand, within ABI39_RS20765 at 5121.743 kb on - strand, within ABI39_RS20765 at 5122.116 kb on + strand at 5122.152 kb on - strand at 5122.152 kb on - strand at 5122.223 kb on + strand, within ABI39_RS20775 at 5122.278 kb on - strand, within ABI39_RS20775 at 5122.299 kb on - strand, within ABI39_RS20775 at 5122.309 kb on + strand, within ABI39_RS20775 at 5122.355 kb on - strand, within ABI39_RS20775 at 5122.361 kb on + strand, within ABI39_RS20775 at 5122.361 kb on + strand, within ABI39_RS20775 at 5122.445 kb on - strand, within ABI39_RS20775 at 5122.504 kb on + strand, within ABI39_RS20775 at 5122.504 kb on + strand, within ABI39_RS20775 at 5122.513 kb on - strand, within ABI39_RS20775 at 5122.597 kb on + strand, within ABI39_RS20775 at 5122.619 kb on - strand, within ABI39_RS20775 at 5122.656 kb on - strand, within ABI39_RS20775 at 5122.658 kb on - strand, within ABI39_RS20775 at 5122.761 kb on - strand at 5122.785 kb on - strand at 5122.802 kb on + strand at 5122.950 kb on + strand, within ABI39_RS20780 at 5122.950 kb on + strand, within ABI39_RS20780 at 5122.989 kb on - strand, within ABI39_RS20780 at 5123.034 kb on + strand, within ABI39_RS20780 at 5123.034 kb on + strand, within ABI39_RS20780 at 5123.039 kb on + strand, within ABI39_RS20780 at 5123.073 kb on + strand, within ABI39_RS20780 at 5123.122 kb on - strand, within ABI39_RS20780 at 5123.151 kb on + strand, within ABI39_RS20780 at 5123.151 kb on + strand, within ABI39_RS20780 at 5123.164 kb on - strand, within ABI39_RS20780 at 5123.164 kb on - strand, within ABI39_RS20780 at 5123.169 kb on - strand, within ABI39_RS20780 at 5123.181 kb on - strand, within ABI39_RS20780 at 5123.301 kb on + strand, within ABI39_RS20780 at 5123.359 kb on + strand, within ABI39_RS20780 at 5123.474 kb on - strand, within ABI39_RS20780 at 5123.507 kb on - strand, within ABI39_RS20780 at 5123.553 kb on + strand, within ABI39_RS20780 at 5123.598 kb on + strand, within ABI39_RS20780 at 5123.684 kb on - strand, within ABI39_RS20780 at 5123.684 kb on - strand, within ABI39_RS20780 at 5123.687 kb on + strand, within ABI39_RS20780 at 5123.688 kb on - strand, within ABI39_RS20780 at 5123.740 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato; filtered 2.5 mg/ml (C) remove 5,121,168 - -0.0 5,121,192 + +1.6 5,121,197 + -0.6 5,121,258 + +1.4 5,121,293 - +0.2 5,121,691 - ABI39_RS20765 0.59 +0.1 5,121,725 - ABI39_RS20765 0.66 -0.1 5,121,743 - ABI39_RS20765 0.69 +1.3 5,122,116 + -0.2 5,122,152 - +0.8 5,122,152 - -1.0 5,122,223 + ABI39_RS20775 0.11 -0.4 5,122,278 - ABI39_RS20775 0.20 +0.3 5,122,299 - ABI39_RS20775 0.24 +1.4 5,122,309 + ABI39_RS20775 0.25 -0.7 5,122,355 - ABI39_RS20775 0.33 -2.4 5,122,361 + ABI39_RS20775 0.34 +0.1 5,122,361 + ABI39_RS20775 0.34 -1.6 5,122,445 - ABI39_RS20775 0.49 -1.1 5,122,504 + ABI39_RS20775 0.59 +0.1 5,122,504 + ABI39_RS20775 0.59 -0.0 5,122,513 - ABI39_RS20775 0.60 -1.5 5,122,597 + ABI39_RS20775 0.75 -0.2 5,122,619 - ABI39_RS20775 0.78 -0.5 5,122,656 - ABI39_RS20775 0.85 +0.6 5,122,658 - ABI39_RS20775 0.85 -0.3 5,122,761 - +0.9 5,122,785 - -0.0 5,122,802 + +1.9 5,122,950 + ABI39_RS20780 0.19 +4.3 5,122,950 + ABI39_RS20780 0.19 -0.4 5,122,989 - ABI39_RS20780 0.23 -0.8 5,123,034 + ABI39_RS20780 0.27 -1.5 5,123,034 + ABI39_RS20780 0.27 +0.7 5,123,039 + ABI39_RS20780 0.27 -0.3 5,123,073 + ABI39_RS20780 0.30 -0.1 5,123,122 - ABI39_RS20780 0.35 -1.1 5,123,151 + ABI39_RS20780 0.37 -1.8 5,123,151 + ABI39_RS20780 0.37 +0.7 5,123,164 - ABI39_RS20780 0.38 -0.8 5,123,164 - ABI39_RS20780 0.38 -0.3 5,123,169 - ABI39_RS20780 0.39 +1.0 5,123,181 - ABI39_RS20780 0.40 -0.6 5,123,301 + ABI39_RS20780 0.51 +0.5 5,123,359 + ABI39_RS20780 0.56 +0.4 5,123,474 - ABI39_RS20780 0.66 -1.8 5,123,507 - ABI39_RS20780 0.69 -0.7 5,123,553 + ABI39_RS20780 0.73 -1.2 5,123,598 + ABI39_RS20780 0.77 -0.7 5,123,684 - ABI39_RS20780 0.85 -0.6 5,123,684 - ABI39_RS20780 0.85 +0.8 5,123,687 + ABI39_RS20780 0.85 -1.0 5,123,688 - ABI39_RS20780 0.85 -1.5 5,123,740 - -0.7
Or see this region's nucleotide sequence