Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS18235

Experiment: Galactan from Potato; filtered 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS18230 and ABI39_RS18235 are separated by 16 nucleotidesABI39_RS18235 and ABI39_RS18240 are separated by 69 nucleotides ABI39_RS18230: ABI39_RS18230 - DNA translocase FtsK, at 4,596,200 to 4,598,665 _RS18230 ABI39_RS18235: ABI39_RS18235 - outer-membrane lipoprotein carrier protein LolA, at 4,598,682 to 4,599,295 _RS18235 ABI39_RS18240: ABI39_RS18240 - thioredoxin-disulfide reductase, at 4,599,365 to 4,600,312 _RS18240 Position (kb) 4598 4599 4600Strain fitness (log2 ratio) -1 0 1 2at 4598.707 kb on + strandat 4599.014 kb on + strand, within ABI39_RS18235at 4599.034 kb on + strand, within ABI39_RS18235at 4599.153 kb on + strand, within ABI39_RS18235at 4599.165 kb on + strand, within ABI39_RS18235at 4599.288 kb on + strandat 4599.328 kb on + strandat 4599.361 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Galactan from Potato; filtered 2.5 mg/ml (C)
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4,598,707 + +1.4
4,599,014 + ABI39_RS18235 0.54 +0.8
4,599,034 + ABI39_RS18235 0.57 +1.4
4,599,153 + ABI39_RS18235 0.77 -0.4
4,599,165 + ABI39_RS18235 0.79 -0.4
4,599,288 + +2.0
4,599,328 + +0.1
4,599,361 + +0.8

Or see this region's nucleotide sequence