Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS17565

Experiment: Galactan from Potato; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Galactan from Potato; filtered 2.5 mg/ml (C)
4,438,816	+				-0.4
4,438,848	-				-1.1
4,438,848	-				-0.1
4,438,893	+				+3.3
4,438,925	+				+1.4
4,439,034	+		ABI39_RS17560	0.16	-1.8
4,439,038	+		ABI39_RS17560	0.17	+1.6
4,439,042	+		ABI39_RS17560	0.17	-0.4
4,439,135	-		ABI39_RS17560	0.28	+0.9
4,439,190	-		ABI39_RS17560	0.34	+0.8
4,439,213	-		ABI39_RS17560	0.37	+0.0
4,439,246	-		ABI39_RS17560	0.40	+0.0
4,439,249	+		ABI39_RS17560	0.41	-2.6
4,439,250	-		ABI39_RS17560	0.41	-0.1
4,439,314	+		ABI39_RS17560	0.48	-0.2
4,439,366	+		ABI39_RS17560	0.54	-1.5
4,439,367	-		ABI39_RS17560	0.54	-0.8
4,439,436	+		ABI39_RS17560	0.62	-0.6
4,439,454	+		ABI39_RS17560	0.64	-0.2
4,439,549	-		ABI39_RS17560	0.75	+1.1
4,439,573	+		ABI39_RS17560	0.78	+1.2
4,439,594	-		ABI39_RS17560	0.80	+1.4
4,439,624	-		ABI39_RS17560	0.84	-0.4
4,439,727	+				+0.3
4,439,728	-				+0.7
4,439,740	+				+1.8
4,439,744	+				-2.5
4,439,755	+				-1.3
4,439,800	-				-0.2
4,439,801	+				+0.7
4,439,803	+				-0.0
4,439,804	-				+0.2
4,439,805	+				-1.3
4,439,805	+				-0.1
4,439,837	+				-0.8
4,439,851	+				-1.5
4,439,908	-		ABI39_RS17565	0.11	-0.1
4,439,948	-		ABI39_RS17565	0.14	+1.6
4,439,948	-		ABI39_RS17565	0.14	+0.8
4,439,961	+		ABI39_RS17565	0.15	-1.1
4,439,961	+		ABI39_RS17565	0.15	-0.9
4,439,962	-		ABI39_RS17565	0.15	+2.8
4,440,033	+		ABI39_RS17565	0.21	-0.1
4,440,033	+		ABI39_RS17565	0.21	-0.1
4,440,155	+		ABI39_RS17565	0.31	+1.4
4,440,156	-		ABI39_RS17565	0.31	-2.2
4,440,185	+		ABI39_RS17565	0.33	+0.0
4,440,188	-		ABI39_RS17565	0.33	+3.0
4,440,194	-		ABI39_RS17565	0.34	-0.1
4,440,199	-		ABI39_RS17565	0.34	-0.1
4,440,269	-		ABI39_RS17565	0.40	-0.4
4,440,269	-		ABI39_RS17565	0.40	-0.5
4,440,269	-		ABI39_RS17565	0.40	+2.8
4,440,269	-		ABI39_RS17565	0.40	-0.0
4,440,270	+		ABI39_RS17565	0.40	-1.2
4,440,366	+		ABI39_RS17565	0.48	+1.2
4,440,384	+		ABI39_RS17565	0.49	+0.6
4,440,384	+		ABI39_RS17565	0.49	-0.2
4,440,385	-		ABI39_RS17565	0.49	+0.5
4,440,408	-		ABI39_RS17565	0.51	-0.4
4,440,514	-		ABI39_RS17565	0.59	-2.8
4,440,560	-		ABI39_RS17565	0.63	+1.4
4,440,560	-		ABI39_RS17565	0.63	-0.2
4,440,572	+		ABI39_RS17565	0.64	-0.0
4,440,573	-		ABI39_RS17565	0.64	-0.2
4,440,599	+		ABI39_RS17565	0.66	+0.2
4,440,600	-		ABI39_RS17565	0.66	+0.6
4,440,602	-		ABI39_RS17565	0.66	+1.5
4,440,607	+		ABI39_RS17565	0.67	-1.1
4,440,608	-		ABI39_RS17565	0.67	+0.6
4,440,638	-		ABI39_RS17565	0.69	-0.7
4,440,697	+		ABI39_RS17565	0.74	-0.4
4,440,728	+		ABI39_RS17565	0.76	-1.9
4,440,849	+		ABI39_RS17565	0.86	+2.5
4,440,859	+		ABI39_RS17565	0.87	+1.5
4,440,893	+		ABI39_RS17565	0.89	+0.4
4,440,893	+		ABI39_RS17565	0.89	-0.2
4,440,894	-		ABI39_RS17565	0.89	-0.1
4,440,949	+				-0.6
4,440,949	+				+1.0
4,440,951	+				+2.1
4,441,021	+				+1.0
4,441,022	-				-0.4
4,441,088	-				+0.4
4,441,102	+				-0.9
4,441,148	+		ABI39_RS17570	0.14	-1.8
4,441,195	+		ABI39_RS17570	0.20	-0.8
4,441,195	+		ABI39_RS17570	0.20	-0.4
4,441,196	-		ABI39_RS17570	0.20	-1.0
4,441,314	+		ABI39_RS17570	0.35	-0.9
4,441,329	+		ABI39_RS17570	0.37	-0.5
4,441,416	+		ABI39_RS17570	0.48	+2.7
4,441,416	+		ABI39_RS17570	0.48	+0.0
4,441,516	+		ABI39_RS17570	0.60	-1.4
4,441,594	-		ABI39_RS17570	0.70	-0.9
4,441,912	-				+0.6
4,441,981	-		ABI39_RS17575	0.18	+2.7
4,441,982	+		ABI39_RS17575	0.18	+0.4
4,441,982	+		ABI39_RS17575	0.18	+0.6
4,441,983	-		ABI39_RS17575	0.18	-1.0