Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS09135

Experiment: Galactan from Potato; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Galactan from Potato; filtered 2.5 mg/ml (C)
2,456,251	+		ABI39_RS09130	0.68	+0.9
2,456,258	-		ABI39_RS09130	0.68	-0.7
2,456,259	+		ABI39_RS09130	0.68	-0.4
2,456,266	+		ABI39_RS09130	0.69	+1.4
2,456,270	+		ABI39_RS09130	0.69	+0.4
2,456,270	+		ABI39_RS09130	0.69	+2.5
2,456,272	+		ABI39_RS09130	0.69	-1.2
2,456,358	+		ABI39_RS09130	0.72	+0.8
2,456,358	+		ABI39_RS09130	0.72	-1.5
2,456,363	-		ABI39_RS09130	0.72	-0.3
2,456,363	-		ABI39_RS09130	0.72	+0.5
2,456,367	+		ABI39_RS09130	0.72	-0.9
2,456,388	+		ABI39_RS09130	0.73	+0.1
2,456,389	-		ABI39_RS09130	0.73	+1.8
2,456,442	-		ABI39_RS09130	0.74	-1.3
2,456,442	-		ABI39_RS09130	0.74	+0.3
2,456,551	+		ABI39_RS09130	0.78	-1.2
2,456,618	-		ABI39_RS09130	0.80	-1.3
2,456,643	-		ABI39_RS09130	0.81	-0.6
2,456,687	-		ABI39_RS09130	0.82	-0.2
2,456,712	-		ABI39_RS09130	0.83	-1.7
2,456,712	-		ABI39_RS09130	0.83	-0.4
2,456,722	+		ABI39_RS09130	0.84	+1.6
2,456,723	-		ABI39_RS09130	0.84	-0.3
2,456,723	-		ABI39_RS09130	0.84	+0.1
2,456,723	-		ABI39_RS09130	0.84	+0.5
2,456,813	-		ABI39_RS09130	0.87	-0.2
2,456,842	+		ABI39_RS09130	0.88	-1.2
2,456,984	-				+1.4
2,457,067	+				-1.9
2,457,068	-				+1.1
2,457,088	+				-2.1
2,457,089	-				+0.0
2,457,089	-				-0.6
2,457,180	+				+0.2
2,457,254	+				-0.4
2,457,255	-				+2.2
2,457,255	-				-0.6
2,457,364	+				-0.1
2,457,365	-				+0.0
2,457,424	-				+1.6
2,457,479	-				-0.2
2,457,676	-		ABI39_RS09135	0.14	+0.5
2,457,720	-		ABI39_RS09135	0.15	+0.2
2,457,768	+		ABI39_RS09135	0.16	+0.2
2,457,834	+		ABI39_RS09135	0.18	+0.2
2,457,872	-		ABI39_RS09135	0.19	-1.3
2,457,894	-		ABI39_RS09135	0.20	-0.7
2,457,960	+		ABI39_RS09135	0.22	-0.3
2,458,000	+		ABI39_RS09135	0.23	+1.3
2,458,014	-		ABI39_RS09135	0.24	+0.1
2,458,032	+		ABI39_RS09135	0.24	+1.6
2,458,101	+		ABI39_RS09135	0.26	+1.0
2,458,112	+		ABI39_RS09135	0.27	-1.8
2,458,113	-		ABI39_RS09135	0.27	-0.7
2,458,148	+		ABI39_RS09135	0.28	+1.4
2,458,237	-		ABI39_RS09135	0.30	-1.6
2,458,348	-		ABI39_RS09135	0.34	+4.3
2,458,348	-		ABI39_RS09135	0.34	+0.0
2,458,542	+		ABI39_RS09135	0.39	-0.6
2,458,721	-		ABI39_RS09135	0.45	-0.1
2,458,721	-		ABI39_RS09135	0.45	-0.9
2,458,784	-		ABI39_RS09135	0.47	+0.6
2,458,804	+		ABI39_RS09135	0.47	-0.8
2,458,907	-		ABI39_RS09135	0.50	-0.5
2,458,912	+		ABI39_RS09135	0.50	-0.7
2,458,915	-		ABI39_RS09135	0.50	-0.0
2,458,959	+		ABI39_RS09135	0.52	-0.5
2,459,002	-		ABI39_RS09135	0.53	-0.5
2,459,006	+		ABI39_RS09135	0.53	+1.3
2,459,037	-		ABI39_RS09135	0.54	-0.7
2,459,064	-		ABI39_RS09135	0.55	+2.1
2,459,098	+		ABI39_RS09135	0.56	-1.8
2,459,189	+		ABI39_RS09135	0.59	-2.5
2,459,189	+		ABI39_RS09135	0.59	+0.8
2,459,190	-		ABI39_RS09135	0.59	-2.3
2,459,190	-		ABI39_RS09135	0.59	-0.3
2,459,213	-		ABI39_RS09135	0.59	-0.3
2,459,472	-		ABI39_RS09135	0.67	-0.5
2,459,512	-		ABI39_RS09135	0.68	+2.5
2,459,513	+		ABI39_RS09135	0.68	+0.0
2,459,741	+		ABI39_RS09135	0.75	+0.6
2,459,833	-		ABI39_RS09135	0.78	-0.2
2,459,833	-		ABI39_RS09135	0.78	+0.2
2,459,854	-		ABI39_RS09135	0.78	-1.4
2,459,947	-		ABI39_RS09135	0.81	+0.9
2,459,988	-		ABI39_RS09135	0.82	+0.5
2,460,053	+		ABI39_RS09135	0.84	-0.7
2,460,054	-		ABI39_RS09135	0.84	+0.5
2,460,120	+		ABI39_RS09135	0.86	-0.1
2,460,360	-				-0.5
2,460,426	+				-0.5
2,460,426	+				-1.6
2,460,426	+				+0.8
2,460,426	+				-1.5
2,460,426	+				-1.0
2,460,495	+				-1.4
2,460,505	-				-0.9
2,460,627	+				+2.4
2,460,628	-				+0.6
2,460,640	+				-0.2
2,460,641	-				+0.3
2,460,753	+				+0.5
2,460,946	+		ABI39_RS09140	0.15	-1.0
2,460,972	-		ABI39_RS09140	0.16	-0.3
2,461,195	+		ABI39_RS09140	0.25	+0.2
2,461,280	+		ABI39_RS09140	0.29	+0.4
2,461,286	-		ABI39_RS09140	0.29	+0.0
2,461,286	-		ABI39_RS09140	0.29	-0.3
2,461,289	-		ABI39_RS09140	0.29	+0.1
2,461,290	-		ABI39_RS09140	0.29	+0.1
2,461,323	-		ABI39_RS09140	0.30	+0.1
2,461,517	-		ABI39_RS09140	0.38	+0.4