Experiment: Galactan from Potato; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS02090 and ABI39_RS02095 are separated by 1 nucleotides ABI39_RS02095 and ABI39_RS02100 are separated by 266 nucleotides ABI39_RS02100 and ABI39_RS02105 are separated by 12 nucleotides
ABI39_RS02090: ABI39_RS02090 - DUF362 domain-containing protein, at 614,991 to 615,968
_RS02090
ABI39_RS02095: ABI39_RS02095 - ECF transporter S component, at 615,970 to 616,249
_RS02095
ABI39_RS02100: ABI39_RS02100 - peptidylprolyl isomerase, at 616,516 to 617,361
_RS02100
ABI39_RS02105: ABI39_RS02105 - insulinase family protein, at 617,374 to 618,618
_RS02105
Position (kb) 616
617
618 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 615.903 kb on - strand at 615.987 kb on + strand at 616.361 kb on - strand at 616.402 kb on + strand at 616.403 kb on - strand at 616.417 kb on + strand at 616.446 kb on + strand at 616.727 kb on + strand, within ABI39_RS02100 at 616.727 kb on + strand, within ABI39_RS02100 at 616.729 kb on + strand, within ABI39_RS02100 at 616.737 kb on + strand, within ABI39_RS02100 at 616.840 kb on + strand, within ABI39_RS02100 at 616.955 kb on - strand, within ABI39_RS02100 at 617.048 kb on + strand, within ABI39_RS02100 at 617.074 kb on + strand, within ABI39_RS02100 at 617.074 kb on + strand, within ABI39_RS02100 at 617.239 kb on + strand, within ABI39_RS02100 at 617.240 kb on - strand, within ABI39_RS02100 at 617.325 kb on - strand at 617.437 kb on - strand at 617.613 kb on + strand, within ABI39_RS02105 at 617.688 kb on + strand, within ABI39_RS02105 at 617.689 kb on - strand, within ABI39_RS02105 at 617.689 kb on - strand, within ABI39_RS02105 at 617.815 kb on + strand, within ABI39_RS02105 at 617.817 kb on + strand, within ABI39_RS02105 at 617.818 kb on - strand, within ABI39_RS02105 at 617.908 kb on - strand, within ABI39_RS02105 at 617.914 kb on + strand, within ABI39_RS02105 at 617.955 kb on + strand, within ABI39_RS02105 at 618.143 kb on - strand, within ABI39_RS02105 at 618.249 kb on + strand, within ABI39_RS02105
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato; filtered 2.5 mg/ml (C) remove 615,903 - -1.2 615,987 + +2.8 616,361 - -0.6 616,402 + +0.9 616,403 - -0.1 616,417 + +0.1 616,446 + +0.3 616,727 + ABI39_RS02100 0.25 +0.4 616,727 + ABI39_RS02100 0.25 +0.9 616,729 + ABI39_RS02100 0.25 +1.1 616,737 + ABI39_RS02100 0.26 +0.8 616,840 + ABI39_RS02100 0.38 +0.3 616,955 - ABI39_RS02100 0.52 +0.7 617,048 + ABI39_RS02100 0.63 +0.9 617,074 + ABI39_RS02100 0.66 +0.2 617,074 + ABI39_RS02100 0.66 +0.3 617,239 + ABI39_RS02100 0.85 +0.7 617,240 - ABI39_RS02100 0.86 -0.4 617,325 - -2.0 617,437 - +0.5 617,613 + ABI39_RS02105 0.19 +0.2 617,688 + ABI39_RS02105 0.25 +1.0 617,689 - ABI39_RS02105 0.25 +0.8 617,689 - ABI39_RS02105 0.25 +1.7 617,815 + ABI39_RS02105 0.35 +1.6 617,817 + ABI39_RS02105 0.36 +1.6 617,818 - ABI39_RS02105 0.36 -0.6 617,908 - ABI39_RS02105 0.43 +1.6 617,914 + ABI39_RS02105 0.43 -0.1 617,955 + ABI39_RS02105 0.47 +1.2 618,143 - ABI39_RS02105 0.62 -1.5 618,249 + ABI39_RS02105 0.70 +0.7
Or see this region's nucleotide sequence