Experiment: Galactan from Potato; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS01860 and ABI39_RS01865 are separated by 281 nucleotides ABI39_RS01865 and ABI39_RS01870 are separated by 124 nucleotides ABI39_RS01870 and ABI39_RS01875 are separated by 189 nucleotides
ABI39_RS01860: ABI39_RS01860 - hypothetical protein, at 550,187 to 551,158
_RS01860
ABI39_RS01865: ABI39_RS01865 - Gfo/Idh/MocA family oxidoreductase, at 551,440 to 552,855
_RS01865
ABI39_RS01870: ABI39_RS01870 - carbonic anhydrase, at 552,980 to 553,519
_RS01870
ABI39_RS01875: ABI39_RS01875 - Crp/Fnr family transcriptional regulator, at 553,709 to 554,293
_RS01875
Position (kb) 551
552
553 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 550.471 kb on - strand, within ABI39_RS01860 at 550.634 kb on + strand, within ABI39_RS01860 at 550.699 kb on + strand, within ABI39_RS01860 at 550.740 kb on + strand, within ABI39_RS01860 at 550.783 kb on + strand, within ABI39_RS01860 at 550.822 kb on - strand, within ABI39_RS01860 at 550.883 kb on + strand, within ABI39_RS01860 at 550.975 kb on + strand, within ABI39_RS01860 at 551.277 kb on - strand at 551.289 kb on + strand at 551.410 kb on - strand at 551.420 kb on - strand at 551.458 kb on - strand at 551.598 kb on - strand, within ABI39_RS01865 at 551.600 kb on + strand, within ABI39_RS01865 at 551.840 kb on + strand, within ABI39_RS01865 at 551.887 kb on + strand, within ABI39_RS01865 at 551.888 kb on - strand, within ABI39_RS01865 at 552.042 kb on - strand, within ABI39_RS01865 at 552.094 kb on + strand, within ABI39_RS01865 at 552.095 kb on - strand, within ABI39_RS01865 at 552.095 kb on - strand, within ABI39_RS01865 at 552.178 kb on + strand, within ABI39_RS01865 at 552.178 kb on + strand, within ABI39_RS01865 at 552.298 kb on + strand, within ABI39_RS01865 at 552.383 kb on + strand, within ABI39_RS01865 at 552.383 kb on + strand, within ABI39_RS01865 at 552.420 kb on + strand, within ABI39_RS01865 at 552.421 kb on - strand, within ABI39_RS01865 at 552.476 kb on - strand, within ABI39_RS01865 at 552.595 kb on - strand, within ABI39_RS01865 at 552.675 kb on - strand, within ABI39_RS01865 at 552.722 kb on + strand at 552.896 kb on + strand at 552.933 kb on + strand at 553.037 kb on - strand, within ABI39_RS01870 at 553.037 kb on - strand, within ABI39_RS01870 at 553.153 kb on + strand, within ABI39_RS01870 at 553.208 kb on - strand, within ABI39_RS01870 at 553.211 kb on - strand, within ABI39_RS01870 at 553.253 kb on - strand, within ABI39_RS01870 at 553.269 kb on - strand, within ABI39_RS01870 at 553.276 kb on - strand, within ABI39_RS01870 at 553.276 kb on - strand, within ABI39_RS01870 at 553.412 kb on - strand, within ABI39_RS01870 at 553.412 kb on - strand, within ABI39_RS01870 at 553.459 kb on - strand, within ABI39_RS01870 at 553.553 kb on - strand at 553.642 kb on - strand at 553.769 kb on - strand, within ABI39_RS01875 at 553.806 kb on + strand, within ABI39_RS01875
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato; filtered 2.5 mg/ml (C) remove 550,471 - ABI39_RS01860 0.29 +0.6 550,634 + ABI39_RS01860 0.46 +0.6 550,699 + ABI39_RS01860 0.53 +0.1 550,740 + ABI39_RS01860 0.57 -0.5 550,783 + ABI39_RS01860 0.61 -0.5 550,822 - ABI39_RS01860 0.65 -0.7 550,883 + ABI39_RS01860 0.72 -0.5 550,975 + ABI39_RS01860 0.81 +0.8 551,277 - +1.6 551,289 + -0.6 551,410 - +0.8 551,420 - +0.3 551,458 - +0.0 551,598 - ABI39_RS01865 0.11 -0.2 551,600 + ABI39_RS01865 0.11 -1.1 551,840 + ABI39_RS01865 0.28 +0.7 551,887 + ABI39_RS01865 0.32 -0.2 551,888 - ABI39_RS01865 0.32 +0.6 552,042 - ABI39_RS01865 0.43 -0.6 552,094 + ABI39_RS01865 0.46 +1.9 552,095 - ABI39_RS01865 0.46 -1.0 552,095 - ABI39_RS01865 0.46 -0.3 552,178 + ABI39_RS01865 0.52 +0.6 552,178 + ABI39_RS01865 0.52 +1.3 552,298 + ABI39_RS01865 0.61 +2.6 552,383 + ABI39_RS01865 0.67 -0.0 552,383 + ABI39_RS01865 0.67 +2.4 552,420 + ABI39_RS01865 0.69 +0.4 552,421 - ABI39_RS01865 0.69 +0.6 552,476 - ABI39_RS01865 0.73 +0.7 552,595 - ABI39_RS01865 0.82 -1.1 552,675 - ABI39_RS01865 0.87 -0.7 552,722 + +1.4 552,896 + +0.1 552,933 + -1.0 553,037 - ABI39_RS01870 0.11 +0.1 553,037 - ABI39_RS01870 0.11 -1.2 553,153 + ABI39_RS01870 0.32 -1.7 553,208 - ABI39_RS01870 0.42 -0.9 553,211 - ABI39_RS01870 0.43 -1.3 553,253 - ABI39_RS01870 0.51 +1.3 553,269 - ABI39_RS01870 0.54 -1.4 553,276 - ABI39_RS01870 0.55 -3.3 553,276 - ABI39_RS01870 0.55 +0.7 553,412 - ABI39_RS01870 0.80 -0.4 553,412 - ABI39_RS01870 0.80 -0.6 553,459 - ABI39_RS01870 0.89 -0.1 553,553 - +0.1 553,642 - +0.8 553,769 - ABI39_RS01875 0.10 +0.2 553,806 + ABI39_RS01875 0.17 +0.2
Or see this region's nucleotide sequence