Experiment: Galactan from Potato; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS00930 and ABI39_RS00935 are separated by 18 nucleotides ABI39_RS00935 and ABI39_RS00940 are separated by 266 nucleotides
ABI39_RS00930: ABI39_RS00930 - RagB/SusD family nutrient uptake outer membrane protein, at 295,517 to 297,493
_RS00930
ABI39_RS00935: ABI39_RS00935 - TonB-dependent receptor, at 297,512 to 300,694
_RS00935
ABI39_RS00940: ABI39_RS00940 - phage integrase SAM-like domain-containing protein, at 300,961 to 302,133
_RS00940
Position (kb) 297
298
299
300
301 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 296.522 kb on - strand, within ABI39_RS00930 at 296.673 kb on + strand, within ABI39_RS00930 at 296.771 kb on + strand, within ABI39_RS00930 at 296.868 kb on + strand, within ABI39_RS00930 at 296.894 kb on - strand, within ABI39_RS00930 at 296.915 kb on - strand, within ABI39_RS00930 at 297.078 kb on - strand, within ABI39_RS00930 at 297.103 kb on + strand, within ABI39_RS00930 at 297.146 kb on - strand, within ABI39_RS00930 at 297.151 kb on + strand, within ABI39_RS00930 at 297.158 kb on - strand, within ABI39_RS00930 at 297.199 kb on + strand, within ABI39_RS00930 at 297.199 kb on + strand, within ABI39_RS00930 at 297.200 kb on - strand, within ABI39_RS00930 at 297.200 kb on - strand, within ABI39_RS00930 at 297.200 kb on - strand, within ABI39_RS00930 at 297.201 kb on + strand, within ABI39_RS00930 at 297.203 kb on + strand, within ABI39_RS00930 at 297.204 kb on - strand, within ABI39_RS00930 at 297.207 kb on + strand, within ABI39_RS00930 at 297.208 kb on - strand, within ABI39_RS00930 at 297.241 kb on - strand, within ABI39_RS00930 at 297.275 kb on - strand, within ABI39_RS00930 at 297.299 kb on - strand at 297.329 kb on - strand at 297.331 kb on - strand at 297.625 kb on + strand at 297.832 kb on + strand, within ABI39_RS00935 at 297.833 kb on - strand, within ABI39_RS00935 at 297.833 kb on - strand, within ABI39_RS00935 at 297.840 kb on - strand, within ABI39_RS00935 at 297.844 kb on + strand, within ABI39_RS00935 at 297.844 kb on + strand, within ABI39_RS00935 at 297.845 kb on - strand, within ABI39_RS00935 at 297.845 kb on - strand, within ABI39_RS00935 at 297.877 kb on + strand, within ABI39_RS00935 at 297.999 kb on + strand, within ABI39_RS00935 at 298.078 kb on - strand, within ABI39_RS00935 at 298.079 kb on + strand, within ABI39_RS00935 at 298.080 kb on - strand, within ABI39_RS00935 at 298.137 kb on - strand, within ABI39_RS00935 at 298.189 kb on + strand, within ABI39_RS00935 at 298.232 kb on - strand, within ABI39_RS00935 at 298.233 kb on + strand, within ABI39_RS00935 at 298.234 kb on - strand, within ABI39_RS00935 at 298.301 kb on + strand, within ABI39_RS00935 at 298.306 kb on + strand, within ABI39_RS00935 at 298.309 kb on - strand, within ABI39_RS00935 at 298.438 kb on + strand, within ABI39_RS00935 at 298.439 kb on - strand, within ABI39_RS00935 at 298.501 kb on + strand, within ABI39_RS00935 at 298.514 kb on + strand, within ABI39_RS00935 at 298.515 kb on - strand, within ABI39_RS00935 at 298.543 kb on + strand, within ABI39_RS00935 at 298.546 kb on + strand, within ABI39_RS00935 at 298.587 kb on - strand, within ABI39_RS00935 at 298.673 kb on - strand, within ABI39_RS00935 at 298.729 kb on + strand, within ABI39_RS00935 at 298.861 kb on + strand, within ABI39_RS00935 at 298.888 kb on - strand, within ABI39_RS00935 at 298.969 kb on - strand, within ABI39_RS00935 at 298.969 kb on - strand, within ABI39_RS00935 at 298.969 kb on - strand, within ABI39_RS00935 at 298.969 kb on - strand, within ABI39_RS00935 at 298.970 kb on + strand, within ABI39_RS00935 at 298.976 kb on - strand, within ABI39_RS00935 at 298.995 kb on - strand, within ABI39_RS00935 at 299.144 kb on + strand, within ABI39_RS00935 at 299.148 kb on - strand, within ABI39_RS00935 at 299.204 kb on - strand, within ABI39_RS00935 at 299.239 kb on + strand, within ABI39_RS00935 at 299.264 kb on + strand, within ABI39_RS00935 at 299.290 kb on + strand, within ABI39_RS00935 at 299.291 kb on - strand, within ABI39_RS00935 at 299.293 kb on + strand, within ABI39_RS00935 at 299.470 kb on + strand, within ABI39_RS00935 at 299.473 kb on - strand, within ABI39_RS00935 at 299.517 kb on - strand, within ABI39_RS00935 at 299.546 kb on + strand, within ABI39_RS00935 at 299.616 kb on - strand, within ABI39_RS00935 at 299.680 kb on + strand, within ABI39_RS00935 at 299.710 kb on + strand, within ABI39_RS00935 at 299.711 kb on - strand, within ABI39_RS00935 at 299.718 kb on - strand, within ABI39_RS00935 at 299.718 kb on - strand, within ABI39_RS00935 at 299.829 kb on - strand, within ABI39_RS00935 at 299.838 kb on + strand, within ABI39_RS00935 at 299.864 kb on - strand, within ABI39_RS00935 at 299.872 kb on + strand, within ABI39_RS00935 at 299.872 kb on + strand, within ABI39_RS00935 at 299.896 kb on + strand, within ABI39_RS00935 at 299.948 kb on - strand, within ABI39_RS00935 at 300.109 kb on + strand, within ABI39_RS00935 at 300.168 kb on - strand, within ABI39_RS00935 at 300.259 kb on + strand, within ABI39_RS00935 at 300.294 kb on + strand, within ABI39_RS00935 at 300.294 kb on + strand, within ABI39_RS00935 at 300.356 kb on - strand, within ABI39_RS00935 at 300.386 kb on - strand at 300.386 kb on - strand at 300.407 kb on + strand at 300.413 kb on - strand at 300.467 kb on + strand at 300.505 kb on + strand at 300.505 kb on + strand at 300.515 kb on + strand at 300.524 kb on + strand at 300.579 kb on - strand at 300.748 kb on - strand at 300.748 kb on - strand at 300.748 kb on - strand at 300.943 kb on - strand at 301.016 kb on + strand at 301.056 kb on + strand at 301.059 kb on - strand at 301.222 kb on + strand, within ABI39_RS00940 at 301.235 kb on - strand, within ABI39_RS00940 at 301.260 kb on - strand, within ABI39_RS00940 at 301.407 kb on + strand, within ABI39_RS00940 at 301.427 kb on + strand, within ABI39_RS00940 at 301.428 kb on - strand, within ABI39_RS00940 at 301.520 kb on + strand, within ABI39_RS00940 at 301.567 kb on - strand, within ABI39_RS00940 at 301.611 kb on - strand, within ABI39_RS00940 at 301.660 kb on + strand, within ABI39_RS00940
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato; filtered 2.5 mg/ml (C) remove 296,522 - ABI39_RS00930 0.51 +0.3 296,673 + ABI39_RS00930 0.58 -0.4 296,771 + ABI39_RS00930 0.63 -3.3 296,868 + ABI39_RS00930 0.68 +0.1 296,894 - ABI39_RS00930 0.70 -0.4 296,915 - ABI39_RS00930 0.71 +0.1 297,078 - ABI39_RS00930 0.79 -1.1 297,103 + ABI39_RS00930 0.80 -0.5 297,146 - ABI39_RS00930 0.82 -1.3 297,151 + ABI39_RS00930 0.83 -0.7 297,158 - ABI39_RS00930 0.83 +0.1 297,199 + ABI39_RS00930 0.85 -2.9 297,199 + ABI39_RS00930 0.85 -1.2 297,200 - ABI39_RS00930 0.85 -0.6 297,200 - ABI39_RS00930 0.85 -0.7 297,200 - ABI39_RS00930 0.85 -1.5 297,201 + ABI39_RS00930 0.85 -0.3 297,203 + ABI39_RS00930 0.85 -0.2 297,204 - ABI39_RS00930 0.85 -1.4 297,207 + ABI39_RS00930 0.85 -1.2 297,208 - ABI39_RS00930 0.86 -0.7 297,241 - ABI39_RS00930 0.87 -1.7 297,275 - ABI39_RS00930 0.89 -1.7 297,299 - -2.4 297,329 - -1.4 297,331 - -0.6 297,625 + -1.4 297,832 + ABI39_RS00935 0.10 -0.9 297,833 - ABI39_RS00935 0.10 -0.9 297,833 - ABI39_RS00935 0.10 -0.3 297,840 - ABI39_RS00935 0.10 -0.7 297,844 + ABI39_RS00935 0.10 -1.0 297,844 + ABI39_RS00935 0.10 -0.9 297,845 - ABI39_RS00935 0.10 -1.7 297,845 - ABI39_RS00935 0.10 -0.7 297,877 + ABI39_RS00935 0.11 -0.2 297,999 + ABI39_RS00935 0.15 -2.1 298,078 - ABI39_RS00935 0.18 -0.7 298,079 + ABI39_RS00935 0.18 -0.0 298,080 - ABI39_RS00935 0.18 -1.0 298,137 - ABI39_RS00935 0.20 -2.9 298,189 + ABI39_RS00935 0.21 -0.4 298,232 - ABI39_RS00935 0.23 -3.4 298,233 + ABI39_RS00935 0.23 -3.7 298,234 - ABI39_RS00935 0.23 -0.3 298,301 + ABI39_RS00935 0.25 -1.9 298,306 + ABI39_RS00935 0.25 -1.4 298,309 - ABI39_RS00935 0.25 -1.2 298,438 + ABI39_RS00935 0.29 +0.3 298,439 - ABI39_RS00935 0.29 -1.4 298,501 + ABI39_RS00935 0.31 +0.1 298,514 + ABI39_RS00935 0.31 -1.3 298,515 - ABI39_RS00935 0.32 -2.0 298,543 + ABI39_RS00935 0.32 -0.4 298,546 + ABI39_RS00935 0.32 -0.3 298,587 - ABI39_RS00935 0.34 -0.7 298,673 - ABI39_RS00935 0.36 -1.0 298,729 + ABI39_RS00935 0.38 +0.0 298,861 + ABI39_RS00935 0.42 -0.3 298,888 - ABI39_RS00935 0.43 -0.3 298,969 - ABI39_RS00935 0.46 -1.0 298,969 - ABI39_RS00935 0.46 -1.2 298,969 - ABI39_RS00935 0.46 -2.0 298,969 - ABI39_RS00935 0.46 -1.7 298,970 + ABI39_RS00935 0.46 -0.2 298,976 - ABI39_RS00935 0.46 -0.6 298,995 - ABI39_RS00935 0.47 +0.7 299,144 + ABI39_RS00935 0.51 -0.7 299,148 - ABI39_RS00935 0.51 -0.6 299,204 - ABI39_RS00935 0.53 -0.6 299,239 + ABI39_RS00935 0.54 -1.4 299,264 + ABI39_RS00935 0.55 -0.3 299,290 + ABI39_RS00935 0.56 -1.7 299,291 - ABI39_RS00935 0.56 -1.4 299,293 + ABI39_RS00935 0.56 -1.0 299,470 + ABI39_RS00935 0.62 -0.9 299,473 - ABI39_RS00935 0.62 +0.1 299,517 - ABI39_RS00935 0.63 +0.1 299,546 + ABI39_RS00935 0.64 -1.1 299,616 - ABI39_RS00935 0.66 -0.6 299,680 + ABI39_RS00935 0.68 -0.2 299,710 + ABI39_RS00935 0.69 -0.8 299,711 - ABI39_RS00935 0.69 -0.2 299,718 - ABI39_RS00935 0.69 -0.7 299,718 - ABI39_RS00935 0.69 -0.5 299,829 - ABI39_RS00935 0.73 -0.2 299,838 + ABI39_RS00935 0.73 -1.1 299,864 - ABI39_RS00935 0.74 -0.1 299,872 + ABI39_RS00935 0.74 -3.1 299,872 + ABI39_RS00935 0.74 -1.2 299,896 + ABI39_RS00935 0.75 -0.9 299,948 - ABI39_RS00935 0.77 -0.2 300,109 + ABI39_RS00935 0.82 -2.9 300,168 - ABI39_RS00935 0.83 -0.5 300,259 + ABI39_RS00935 0.86 -0.2 300,294 + ABI39_RS00935 0.87 -0.9 300,294 + ABI39_RS00935 0.87 -0.5 300,356 - ABI39_RS00935 0.89 +1.3 300,386 - +0.5 300,386 - -0.9 300,407 + -0.0 300,413 - +0.1 300,467 + -0.4 300,505 + -0.6 300,505 + -0.7 300,515 + -3.1 300,524 + -0.1 300,579 - +0.6 300,748 - +1.6 300,748 - -0.6 300,748 - +0.9 300,943 - -2.4 301,016 + +0.9 301,056 + -0.2 301,059 - -0.1 301,222 + ABI39_RS00940 0.22 -0.9 301,235 - ABI39_RS00940 0.23 -2.6 301,260 - ABI39_RS00940 0.25 -1.8 301,407 + ABI39_RS00940 0.38 -1.0 301,427 + ABI39_RS00940 0.40 -0.4 301,428 - ABI39_RS00940 0.40 -0.2 301,520 + ABI39_RS00940 0.48 -1.5 301,567 - ABI39_RS00940 0.52 +1.7 301,611 - ABI39_RS00940 0.55 -0.8 301,660 + ABI39_RS00940 0.60 -0.6
Or see this region's nucleotide sequence