Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS12280

Experiment: Galactan from Potato; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Galactan from Potato; filtered 2.5 mg/ml (C)
3,240,726	-				-1.0
3,240,874	-				-1.2
3,240,915	-		ABI39_RS12275	0.12	-0.8
3,240,928	+		ABI39_RS12275	0.14	-1.0
3,240,947	+		ABI39_RS12275	0.17	+0.4
3,240,947	+		ABI39_RS12275	0.17	-0.6
3,241,030	+		ABI39_RS12275	0.32	-0.8
3,241,035	-		ABI39_RS12275	0.33	-1.2
3,241,126	-		ABI39_RS12275	0.50	+2.4
3,241,131	+		ABI39_RS12275	0.51	+0.5
3,241,131	+		ABI39_RS12275	0.51	-0.8
3,241,132	-		ABI39_RS12275	0.51	-1.2
3,241,132	-		ABI39_RS12275	0.51	-2.6
3,241,182	+		ABI39_RS12275	0.60	-0.1
3,241,264	+		ABI39_RS12275	0.75	+0.1
3,241,307	+		ABI39_RS12275	0.83	+1.7
3,241,320	-		ABI39_RS12275	0.85	+0.6
3,241,326	+		ABI39_RS12275	0.86	+0.5
3,241,369	+				+0.2
3,241,374	-				+2.0
3,241,375	+				-0.2
3,241,467	+				+0.1
3,241,703	-				+1.8
3,241,717	+				+0.0
3,241,723	+				+0.4
3,241,725	+		ABI39_RS12280	0.10	-0.8
3,241,754	-		ABI39_RS12280	0.16	-0.3
3,241,755	+		ABI39_RS12280	0.16	-0.4
3,241,756	-		ABI39_RS12280	0.16	+1.7
3,241,939	+		ABI39_RS12280	0.52	+0.7
3,241,941	+		ABI39_RS12280	0.52	-0.1
3,242,072	-		ABI39_RS12280	0.77	+1.4
3,242,074	+		ABI39_RS12280	0.78	+0.3
3,242,118	+		ABI39_RS12280	0.86	-1.5
3,242,118	+		ABI39_RS12280	0.86	+1.1
3,242,188	+				+0.6
3,242,196	-				+0.7
3,242,198	-				+0.3
3,242,298	-		ABI39_RS12285	0.12	+1.8
3,242,339	+		ABI39_RS12285	0.19	-2.6
3,242,359	+		ABI39_RS12285	0.23	-0.8
3,242,371	+		ABI39_RS12285	0.25	-0.4
3,242,371	+		ABI39_RS12285	0.25	-1.2
3,242,394	+		ABI39_RS12285	0.29	-1.0
3,242,395	-		ABI39_RS12285	0.29	+0.1
3,242,615	-		ABI39_RS12285	0.66	-0.3
3,242,685	+		ABI39_RS12285	0.78	+0.6
3,242,693	-		ABI39_RS12285	0.80	+0.4
3,242,804	+				-0.1
3,242,816	-				+1.9
3,242,898	+		ABI39_RS12290	0.11	+0.2
3,242,995	-		ABI39_RS12290	0.24	-0.0
3,243,006	-		ABI39_RS12290	0.26	+0.2
3,243,127	-		ABI39_RS12290	0.42	+0.7