Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS05075

Experiment: Galactan from Potato; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Galactan from Potato; filtered 2.5 mg/ml (C)
1,411,686	+				-0.6
1,411,719	-				+0.4
1,411,744	-				-0.1
1,411,745	+				-0.0
1,411,746	-				+0.0
1,411,752	-				-0.3
1,411,752	-				-1.6
1,411,788	-		ABI39_RS22670	0.12	-1.2
1,411,839	+		ABI39_RS22670	0.18	+0.8
1,411,841	+		ABI39_RS22670	0.18	-0.5
1,411,841	+		ABI39_RS22670	0.18	-0.3
1,411,842	-		ABI39_RS22670	0.18	-0.1
1,411,842	-		ABI39_RS22670	0.18	-0.7
1,411,865	-		ABI39_RS22670	0.21	-0.8
1,411,880	+		ABI39_RS22670	0.23	+0.9
1,411,905	-		ABI39_RS22670	0.26	+0.2
1,411,987	-		ABI39_RS22670	0.36	-1.0
1,412,005	+		ABI39_RS22670	0.38	+0.9
1,412,006	-		ABI39_RS22670	0.38	-0.5
1,412,029	+		ABI39_RS22670	0.41	-1.0
1,412,107	-		ABI39_RS22670	0.50	+0.9
1,412,114	-		ABI39_RS22670	0.51	-1.3
1,412,157	-		ABI39_RS22670	0.57	+0.6
1,412,157	-		ABI39_RS22670	0.57	+1.1
1,412,174	+		ABI39_RS22670	0.59	+0.7
1,412,190	+		ABI39_RS22670	0.61	+0.4
1,412,191	-		ABI39_RS22670	0.61	+0.3
1,412,191	-		ABI39_RS22670	0.61	+1.0
1,412,238	-		ABI39_RS22670	0.66	+1.8
1,412,274	-		ABI39_RS22670	0.71	-0.2
1,412,324	+		ABI39_RS22670	0.77	-0.5
1,412,358	+		ABI39_RS22670	0.81	-0.4
1,412,384	+		ABI39_RS22670	0.84	-0.3
1,412,385	-		ABI39_RS22670	0.84	+0.8
1,412,385	-		ABI39_RS22670	0.84	-0.9
1,412,408	+		ABI39_RS22670	0.87	+0.8
1,412,426	+		ABI39_RS22670	0.89	+0.7
1,412,535	-				-0.2
1,412,670	+				+0.4
1,412,711	+				+0.8
1,412,736	-				+0.3
1,412,755	-				+2.7
1,412,756	+				+1.1
1,412,860	+				+0.4
1,412,870	+				+1.0
1,412,891	+				-0.5
1,412,892	-				+0.7
1,412,903	+		ABI39_RS05075	0.10	+3.9
1,412,915	+		ABI39_RS05075	0.11	+1.7
1,412,915	+		ABI39_RS05075	0.11	+2.5
1,412,915	+		ABI39_RS05075	0.11	-0.1
1,413,066	-		ABI39_RS05075	0.16	+1.5
1,413,136	+		ABI39_RS05075	0.19	+2.2
1,413,152	+		ABI39_RS05075	0.19	-1.0
1,413,171	-		ABI39_RS05075	0.20	-0.2
1,413,182	-		ABI39_RS05075	0.21	+0.2
1,413,249	+		ABI39_RS05075	0.23	+3.0
1,413,333	-		ABI39_RS05075	0.26	+0.2
1,413,356	+		ABI39_RS05075	0.27	+2.0
1,413,356	+		ABI39_RS05075	0.27	-0.3
1,413,368	+		ABI39_RS05075	0.27	-1.3
1,413,368	+		ABI39_RS05075	0.27	-0.2
1,413,369	-		ABI39_RS05075	0.28	+2.8
1,413,456	-		ABI39_RS05075	0.31	+0.1
1,413,506	+		ABI39_RS05075	0.33	+2.2
1,413,514	+		ABI39_RS05075	0.33	-0.2
1,413,560	+		ABI39_RS05075	0.35	+0.2
1,413,738	+		ABI39_RS05075	0.41	+3.9
1,413,775	-		ABI39_RS05075	0.43	+1.0
1,413,812	+		ABI39_RS05075	0.44	+1.6
1,413,815	+		ABI39_RS05075	0.44	+1.8
1,413,830	+		ABI39_RS05075	0.45	+1.3
1,413,900	+		ABI39_RS05075	0.47	+2.1
1,413,908	-		ABI39_RS05075	0.48	+2.9
1,413,971	+		ABI39_RS05075	0.50	+1.7
1,413,971	+		ABI39_RS05075	0.50	+1.6
1,413,972	-		ABI39_RS05075	0.50	+1.7
1,413,998	+		ABI39_RS05075	0.51	-0.4
1,413,999	-		ABI39_RS05075	0.51	-0.1
1,414,044	+		ABI39_RS05075	0.53	-1.8
1,414,062	+		ABI39_RS05075	0.53	+1.1
1,414,062	+		ABI39_RS05075	0.53	+0.3
1,414,063	-		ABI39_RS05075	0.53	+0.4
1,414,063	-		ABI39_RS05075	0.53	+0.3
1,414,077	-		ABI39_RS05075	0.54	+3.2
1,414,400	+		ABI39_RS05075	0.66	-0.6
1,414,433	+		ABI39_RS05075	0.67	+0.5
1,414,463	+		ABI39_RS05075	0.68	-1.2
1,414,586	-		ABI39_RS05075	0.73	-0.5
1,414,608	+		ABI39_RS05075	0.74	-0.8
1,414,640	+		ABI39_RS05075	0.75	-0.1
1,414,695	+		ABI39_RS05075	0.77	+1.7
1,414,703	+		ABI39_RS05075	0.77	+0.3
1,414,704	-		ABI39_RS05075	0.77	+0.8
1,414,845	+		ABI39_RS05075	0.83	+3.1
1,414,846	-		ABI39_RS05075	0.83	+1.4
1,414,850	+		ABI39_RS05075	0.83	+3.4
1,414,851	-		ABI39_RS05075	0.83	+0.6
1,414,860	-		ABI39_RS05075	0.83	+0.2
1,414,871	+		ABI39_RS05075	0.84	+0.1
1,414,872	-		ABI39_RS05075	0.84	+4.6
1,414,922	+		ABI39_RS05075	0.85	+1.7
1,414,930	-		ABI39_RS05075	0.86	+4.8
1,414,930	-		ABI39_RS05075	0.86	-1.5
1,414,953	+		ABI39_RS05075	0.87	+0.6
1,415,136	+				-0.1
1,415,181	-				+0.6
1,415,231	-				+2.1
1,415,644	-		ABI39_RS05080	0.56	+3.4
1,415,712	+		ABI39_RS05080	0.70	+1.0
1,415,714	+		ABI39_RS05080	0.70	+0.7
1,415,814	+				+2.0
1,415,814	+				+3.3
1,415,973	+				+3.0
1,416,072	+				-1.4
1,416,102	+				+2.5
1,416,102	+				+0.2
1,416,102	+				-1.3
1,416,103	-				-0.7
1,416,103	-				-0.4
1,416,124	-				+1.2
1,416,124	-				+0.2