Experiment: Galactan from Potato; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS02890 and ABI39_RS02895 are separated by 318 nucleotides ABI39_RS02895 and ABI39_RS02900 are separated by 21 nucleotides ABI39_RS02900 and ABI39_RS02905 are separated by 100 nucleotides
ABI39_RS02890: ABI39_RS02890 - GH92 family glycosyl hydrolase, at 835,200 to 837,392
_RS02890
ABI39_RS02895: ABI39_RS02895 - ATP-binding protein, at 837,711 to 838,841
_RS02895
ABI39_RS02900: ABI39_RS02900 - hypothetical protein, at 838,863 to 839,504
_RS02900
ABI39_RS02905: ABI39_RS02905 - SusD family outer membrane lipoprotein NanU, at 839,605 to 841,194
_RS02905
Position (kb) 837
838
839 Strain fitness (log2 ratio) -2
-1
0
1
2 at 837.013 kb on - strand, within ABI39_RS02890 at 837.021 kb on - strand, within ABI39_RS02890 at 837.192 kb on + strand at 837.305 kb on + strand at 837.305 kb on + strand at 837.359 kb on - strand at 837.379 kb on - strand at 837.420 kb on + strand at 837.420 kb on + strand at 837.421 kb on - strand at 837.542 kb on - strand at 837.557 kb on + strand at 837.644 kb on - strand at 837.646 kb on - strand at 838.385 kb on + strand, within ABI39_RS02895
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato; filtered 2.5 mg/ml (C) remove 837,013 - ABI39_RS02890 0.83 -1.3 837,021 - ABI39_RS02890 0.83 +1.0 837,192 + +0.6 837,305 + +0.6 837,305 + -2.2 837,359 - +0.6 837,379 - -0.4 837,420 + -1.0 837,420 + +1.8 837,421 - -0.1 837,542 - +0.7 837,557 + -1.0 837,644 - +0.2 837,646 - -0.5 838,385 + ABI39_RS02895 0.60 -0.5
Or see this region's nucleotide sequence