Experiment: Galactan from Potato; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS02350 and ABI39_RS02355 overlap by 4 nucleotides ABI39_RS02355 and ABI39_RS02360 are separated by 82 nucleotides ABI39_RS02360 and ABI39_RS02365 are separated by 34 nucleotides ABI39_RS02365 and ABI39_RS02370 are separated by 82 nucleotides
ABI39_RS02350: ABI39_RS02350 - ABC transporter permease, at 682,338 to 683,081
_RS02350
ABI39_RS02355: ABI39_RS02355 - ABC transporter ATP-binding protein, at 683,078 to 683,842
_RS02355
ABI39_RS02360: ABI39_RS02360 - ribosome biogenesis GTPase Der, at 683,925 to 685,238
_RS02360
ABI39_RS02365: ABI39_RS02365 - GTPase Era, at 685,273 to 686,154
_RS02365
ABI39_RS02370: ABI39_RS02370 - ketoacyl-ACP synthase III, at 686,237 to 687,241
_RS02370
Position (kb) 683
684
685
686 Strain fitness (log2 ratio) -2
-1
0
1 at 682.937 kb on + strand, within ABI39_RS02350 at 682.956 kb on + strand, within ABI39_RS02350 at 682.994 kb on - strand, within ABI39_RS02350 at 683.036 kb on + strand at 683.098 kb on - strand at 683.099 kb on + strand at 683.101 kb on + strand at 683.150 kb on - strand at 683.215 kb on + strand, within ABI39_RS02355 at 683.374 kb on - strand, within ABI39_RS02355 at 683.518 kb on + strand, within ABI39_RS02355 at 683.532 kb on + strand, within ABI39_RS02355 at 683.553 kb on + strand, within ABI39_RS02355 at 683.706 kb on - strand, within ABI39_RS02355 at 683.711 kb on + strand, within ABI39_RS02355 at 683.762 kb on - strand, within ABI39_RS02355 at 683.840 kb on + strand at 683.841 kb on - strand at 683.843 kb on + strand at 683.865 kb on + strand at 686.236 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato; filtered 2.5 mg/ml (C) remove 682,937 + ABI39_RS02350 0.81 -2.3 682,956 + ABI39_RS02350 0.83 +0.5 682,994 - ABI39_RS02350 0.88 -0.5 683,036 + -1.4 683,098 - -1.7 683,099 + -1.0 683,101 + -2.5 683,150 - -0.2 683,215 + ABI39_RS02355 0.18 -1.6 683,374 - ABI39_RS02355 0.39 +0.3 683,518 + ABI39_RS02355 0.58 -1.5 683,532 + ABI39_RS02355 0.59 +0.1 683,553 + ABI39_RS02355 0.62 -1.7 683,706 - ABI39_RS02355 0.82 -1.1 683,711 + ABI39_RS02355 0.83 -2.1 683,762 - ABI39_RS02355 0.89 -0.5 683,840 + -2.1 683,841 - +1.2 683,843 + +0.5 683,865 + +1.1 686,236 - -1.4
Or see this region's nucleotide sequence