Experiment: Galactan from Potato; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS00165 and ABI39_RS00170 are separated by 626 nucleotides ABI39_RS00170 and ABI39_RS00175 are separated by 14 nucleotides
ABI39_RS00165: ABI39_RS00165 - response regulator, at 42,153 to 46,205
_RS00165
ABI39_RS00170: ABI39_RS00170 - RagB/SusD family nutrient uptake outer membrane protein, at 46,832 to 48,766
_RS00170
ABI39_RS00175: ABI39_RS00175 - TonB-dependent receptor, at 48,781 to 51,852
_RS00175
Position (kb) 46
47
48
49 Strain fitness (log2 ratio) -1
0
1
2
3 at 45.943 kb on + strand at 46.157 kb on - strand at 46.158 kb on + strand at 46.158 kb on + strand at 46.316 kb on - strand at 46.316 kb on - strand at 46.316 kb on - strand at 46.316 kb on - strand at 46.320 kb on - strand at 46.320 kb on - strand at 46.322 kb on - strand at 46.541 kb on + strand at 46.568 kb on + strand at 46.657 kb on + strand at 47.172 kb on + strand, within ABI39_RS00170 at 47.172 kb on + strand, within ABI39_RS00170 at 47.172 kb on + strand, within ABI39_RS00170 at 47.390 kb on + strand, within ABI39_RS00170 at 47.390 kb on + strand, within ABI39_RS00170 at 47.391 kb on - strand, within ABI39_RS00170 at 47.391 kb on - strand, within ABI39_RS00170 at 47.447 kb on - strand, within ABI39_RS00170 at 47.490 kb on - strand, within ABI39_RS00170 at 47.490 kb on - strand, within ABI39_RS00170 at 47.510 kb on + strand, within ABI39_RS00170 at 47.590 kb on + strand, within ABI39_RS00170 at 47.624 kb on - strand, within ABI39_RS00170 at 47.878 kb on - strand, within ABI39_RS00170 at 47.986 kb on - strand, within ABI39_RS00170 at 48.582 kb on + strand at 48.589 kb on - strand at 48.603 kb on + strand at 48.643 kb on + strand at 48.652 kb on + strand at 48.660 kb on + strand at 48.810 kb on - strand at 48.862 kb on - strand at 48.862 kb on - strand at 49.402 kb on - strand, within ABI39_RS00175 at 49.420 kb on - strand, within ABI39_RS00175 at 49.505 kb on + strand, within ABI39_RS00175 at 49.707 kb on - strand, within ABI39_RS00175 at 49.707 kb on - strand, within ABI39_RS00175 at 49.707 kb on - strand, within ABI39_RS00175 at 49.714 kb on + strand, within ABI39_RS00175
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato; filtered 2.5 mg/ml (C) remove 45,943 + -0.4 46,157 - +1.9 46,158 + -1.6 46,158 + +0.1 46,316 - -0.4 46,316 - -0.4 46,316 - +3.6 46,316 - +0.4 46,320 - +0.8 46,320 - -0.2 46,322 - +3.0 46,541 + +0.3 46,568 + -0.7 46,657 + +0.2 47,172 + ABI39_RS00170 0.18 -0.1 47,172 + ABI39_RS00170 0.18 -1.2 47,172 + ABI39_RS00170 0.18 -0.4 47,390 + ABI39_RS00170 0.29 -0.8 47,390 + ABI39_RS00170 0.29 +0.1 47,391 - ABI39_RS00170 0.29 -1.5 47,391 - ABI39_RS00170 0.29 +0.3 47,447 - ABI39_RS00170 0.32 -0.6 47,490 - ABI39_RS00170 0.34 -0.7 47,490 - ABI39_RS00170 0.34 +0.3 47,510 + ABI39_RS00170 0.35 -0.1 47,590 + ABI39_RS00170 0.39 +0.2 47,624 - ABI39_RS00170 0.41 -0.7 47,878 - ABI39_RS00170 0.54 +0.4 47,986 - ABI39_RS00170 0.60 -1.4 48,582 + -0.7 48,589 - -0.6 48,603 + +0.5 48,643 + +0.1 48,652 + +0.8 48,660 + +1.1 48,810 - -0.1 48,862 - +0.9 48,862 - +0.5 49,402 - ABI39_RS00175 0.20 -0.7 49,420 - ABI39_RS00175 0.21 +2.2 49,505 + ABI39_RS00175 0.24 +0.7 49,707 - ABI39_RS00175 0.30 -0.1 49,707 - ABI39_RS00175 0.30 +0.4 49,707 - ABI39_RS00175 0.30 -0.9 49,714 + ABI39_RS00175 0.30 +2.0
Or see this region's nucleotide sequence