Experiment: Galactan from Potato; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS17060 and ABI39_RS17065 are separated by 299 nucleotides ABI39_RS17065 and ABI39_RS17070 overlap by 4 nucleotides ABI39_RS17070 and ABI39_RS17075 are separated by 2 nucleotides
ABI39_RS17060: ABI39_RS17060 - sigma-54-dependent Fis family transcriptional regulator, at 4,322,254 to 4,323,591
_RS17060
ABI39_RS17065: ABI39_RS17065 - glycine betaine/L-proline ABC transporter ATP-binding protein, at 4,323,891 to 4,325,117
_RS17065
ABI39_RS17070: ABI39_RS17070 - proline/glycine betaine ABC transporter permease, at 4,325,114 to 4,325,938
_RS17070
ABI39_RS17075: ABI39_RS17075 - glycine betaine ABC transporter substrate-binding protein, at 4,325,941 to 4,326,783
_RS17075
Position (kb) 4323
4324
4325
4326 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4322.952 kb on + strand, within ABI39_RS17060 at 4323.103 kb on - strand, within ABI39_RS17060 at 4323.170 kb on - strand, within ABI39_RS17060 at 4323.273 kb on + strand, within ABI39_RS17060 at 4323.295 kb on - strand, within ABI39_RS17060 at 4323.297 kb on - strand, within ABI39_RS17060 at 4323.400 kb on - strand, within ABI39_RS17060 at 4323.469 kb on - strand at 4323.469 kb on - strand at 4323.574 kb on - strand at 4323.582 kb on + strand at 4323.594 kb on - strand at 4323.594 kb on - strand at 4323.620 kb on + strand at 4323.621 kb on - strand at 4323.671 kb on - strand at 4323.739 kb on + strand at 4323.784 kb on + strand at 4323.885 kb on + strand at 4323.916 kb on + strand at 4323.917 kb on - strand at 4323.919 kb on - strand at 4324.001 kb on + strand at 4324.210 kb on + strand, within ABI39_RS17065 at 4324.214 kb on + strand, within ABI39_RS17065 at 4324.214 kb on + strand, within ABI39_RS17065 at 4324.215 kb on - strand, within ABI39_RS17065 at 4324.215 kb on - strand, within ABI39_RS17065 at 4324.340 kb on - strand, within ABI39_RS17065 at 4324.575 kb on - strand, within ABI39_RS17065 at 4324.854 kb on - strand, within ABI39_RS17065 at 4324.884 kb on - strand, within ABI39_RS17065 at 4324.891 kb on + strand, within ABI39_RS17065 at 4324.892 kb on - strand, within ABI39_RS17065 at 4324.995 kb on + strand at 4324.996 kb on - strand at 4325.085 kb on - strand at 4325.133 kb on - strand at 4325.214 kb on + strand, within ABI39_RS17070 at 4325.215 kb on - strand, within ABI39_RS17070 at 4325.232 kb on + strand, within ABI39_RS17070 at 4325.233 kb on - strand, within ABI39_RS17070 at 4325.256 kb on + strand, within ABI39_RS17070 at 4325.262 kb on + strand, within ABI39_RS17070 at 4325.413 kb on + strand, within ABI39_RS17070 at 4325.678 kb on - strand, within ABI39_RS17070 at 4325.815 kb on - strand, within ABI39_RS17070 at 4325.880 kb on + strand at 4325.881 kb on - strand at 4325.936 kb on + strand at 4325.936 kb on + strand at 4325.936 kb on + strand at 4325.937 kb on - strand at 4325.957 kb on - strand at 4326.033 kb on - strand, within ABI39_RS17075
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato; autoclaved 2.5 mg/ml (C) remove 4,322,952 + ABI39_RS17060 0.52 -0.8 4,323,103 - ABI39_RS17060 0.63 +0.3 4,323,170 - ABI39_RS17060 0.68 +0.3 4,323,273 + ABI39_RS17060 0.76 -0.4 4,323,295 - ABI39_RS17060 0.78 +0.5 4,323,297 - ABI39_RS17060 0.78 -0.8 4,323,400 - ABI39_RS17060 0.86 +0.1 4,323,469 - +0.8 4,323,469 - -0.8 4,323,574 - -0.5 4,323,582 + -0.1 4,323,594 - +0.2 4,323,594 - +0.3 4,323,620 + +1.7 4,323,621 - -0.3 4,323,671 - -0.6 4,323,739 + +0.3 4,323,784 + +1.4 4,323,885 + -0.3 4,323,916 + -2.9 4,323,917 - +0.4 4,323,919 - -1.8 4,324,001 + +1.6 4,324,210 + ABI39_RS17065 0.26 -0.0 4,324,214 + ABI39_RS17065 0.26 -1.5 4,324,214 + ABI39_RS17065 0.26 -1.7 4,324,215 - ABI39_RS17065 0.26 +0.0 4,324,215 - ABI39_RS17065 0.26 +0.1 4,324,340 - ABI39_RS17065 0.37 -1.1 4,324,575 - ABI39_RS17065 0.56 +0.9 4,324,854 - ABI39_RS17065 0.78 -0.7 4,324,884 - ABI39_RS17065 0.81 +0.7 4,324,891 + ABI39_RS17065 0.81 +1.0 4,324,892 - ABI39_RS17065 0.82 -0.7 4,324,995 + -0.8 4,324,996 - -0.1 4,325,085 - -0.5 4,325,133 - +0.3 4,325,214 + ABI39_RS17070 0.12 -2.4 4,325,215 - ABI39_RS17070 0.12 +0.2 4,325,232 + ABI39_RS17070 0.14 -0.1 4,325,233 - ABI39_RS17070 0.14 -3.0 4,325,256 + ABI39_RS17070 0.17 +0.2 4,325,262 + ABI39_RS17070 0.18 +0.5 4,325,413 + ABI39_RS17070 0.36 -0.1 4,325,678 - ABI39_RS17070 0.68 +0.1 4,325,815 - ABI39_RS17070 0.85 -0.2 4,325,880 + +0.9 4,325,881 - +0.5 4,325,936 + -0.5 4,325,936 + +0.1 4,325,936 + -1.1 4,325,937 - -0.7 4,325,957 - +0.3 4,326,033 - ABI39_RS17075 0.11 +0.6
Or see this region's nucleotide sequence