Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS06550

Experiment: Galactan from Potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Galactan from Potato; autoclaved 2.5 mg/ml (C)
1,809,350	+		ABI39_RS06540	0.81	+0.3
1,809,538	-				-0.2
1,809,538	-				-1.0
1,809,566	+				+0.1
1,809,594	+				+0.1
1,809,595	-				+1.6
1,809,596	+				+1.2
1,809,598	+				-0.2
1,809,598	+				+0.3
1,809,599	-				-0.0
1,809,635	+				+0.3
1,809,750	+		ABI39_RS06545	0.22	-0.6
1,809,762	+		ABI39_RS06545	0.24	-1.8
1,809,784	+		ABI39_RS06545	0.27	+0.8
1,809,861	-		ABI39_RS06545	0.37	+0.9
1,809,912	+		ABI39_RS06545	0.44	+0.1
1,809,913	-		ABI39_RS06545	0.44	+0.6
1,809,931	+		ABI39_RS06545	0.47	+0.4
1,809,939	+		ABI39_RS06545	0.48	+0.1
1,810,076	+		ABI39_RS06545	0.67	+0.6
1,810,223	+		ABI39_RS06545	0.87	+0.7
1,810,236	+		ABI39_RS06545	0.89	+1.3
1,810,237	-		ABI39_RS06545	0.89	-0.8
1,810,237	-		ABI39_RS06545	0.89	-1.1
1,810,303	+				-1.3
1,810,348	-				+0.4
1,810,348	-				+1.0
1,810,383	-				+1.3
1,810,383	-				+1.7
1,810,383	-				+0.8
1,810,483	-		ABI39_RS06550	0.11	-0.3
1,810,517	-		ABI39_RS06550	0.13	+0.1
1,810,613	-		ABI39_RS06550	0.20	-0.1
1,810,796	+		ABI39_RS06550	0.31	-1.5
1,810,827	+		ABI39_RS06550	0.33	+0.8
1,810,854	+		ABI39_RS06550	0.35	-1.7
1,810,854	+		ABI39_RS06550	0.35	-1.0
1,810,938	-		ABI39_RS06550	0.41	-0.0
1,811,002	+		ABI39_RS06550	0.45	-1.1
1,811,347	+		ABI39_RS06550	0.67	+1.2
1,811,368	-		ABI39_RS06550	0.69	+0.4
1,811,461	-		ABI39_RS06550	0.75	+0.2
1,811,461	-		ABI39_RS06550	0.75	+0.5
1,811,461	-		ABI39_RS06550	0.75	-0.4
1,811,628	+		ABI39_RS06550	0.86	-0.6
1,811,633	+		ABI39_RS06550	0.86	-0.5
1,811,826	-				+0.0
1,811,906	+				-1.3
1,811,909	+				+1.3
1,811,970	-				-0.8
1,812,035	+				+0.5
1,812,076	-				+0.2