Experiment: Galactan from Potato; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS21035 and ABI39_RS21040 are separated by 475 nucleotides ABI39_RS21040 and ABI39_RS21045 are separated by 257 nucleotides ABI39_RS21045 and ABI39_RS21050 are separated by 60 nucleotides
ABI39_RS21035: ABI39_RS21035 - DUF308 domain-containing protein, at 5,180,327 to 5,180,893
_RS21035
ABI39_RS21040: ABI39_RS21040 - YtxH domain-containing protein, at 5,181,369 to 5,181,629
_RS21040
ABI39_RS21045: ABI39_RS21045 - tryptophan synthase subunit beta, at 5,181,887 to 5,183,086
_RS21045
ABI39_RS21050: ABI39_RS21050 - anthranilate synthase component I family protein, at 5,183,147 to 5,184,547
_RS21050
Position (kb) 5181
5182
5183
5184 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 5180.927 kb on + strand at 5180.968 kb on + strand at 5180.968 kb on + strand at 5181.029 kb on - strand at 5181.148 kb on - strand at 5181.250 kb on - strand at 5181.267 kb on - strand at 5181.275 kb on + strand at 5181.363 kb on - strand at 5181.363 kb on - strand at 5181.403 kb on + strand, within ABI39_RS21040 at 5181.427 kb on + strand, within ABI39_RS21040 at 5181.478 kb on - strand, within ABI39_RS21040 at 5181.496 kb on + strand, within ABI39_RS21040 at 5181.536 kb on + strand, within ABI39_RS21040 at 5181.537 kb on - strand, within ABI39_RS21040 at 5181.551 kb on - strand, within ABI39_RS21040 at 5181.608 kb on - strand at 5181.624 kb on - strand at 5181.717 kb on + strand at 5181.718 kb on - strand at 5181.718 kb on - strand at 5181.721 kb on + strand at 5181.725 kb on + strand at 5181.776 kb on + strand at 5181.783 kb on - strand at 5181.797 kb on + strand at 5181.877 kb on + strand at 5181.917 kb on + strand at 5182.292 kb on + strand, within ABI39_RS21045 at 5182.449 kb on - strand, within ABI39_RS21045 at 5182.449 kb on - strand, within ABI39_RS21045 at 5182.451 kb on + strand, within ABI39_RS21045 at 5182.566 kb on - strand, within ABI39_RS21045 at 5182.574 kb on + strand, within ABI39_RS21045 at 5182.628 kb on + strand, within ABI39_RS21045 at 5182.628 kb on + strand, within ABI39_RS21045 at 5182.629 kb on - strand, within ABI39_RS21045 at 5182.633 kb on - strand, within ABI39_RS21045 at 5182.933 kb on + strand, within ABI39_RS21045 at 5183.091 kb on + strand at 5183.128 kb on + strand at 5183.200 kb on + strand at 5183.212 kb on + strand at 5183.227 kb on - strand at 5183.271 kb on - strand at 5183.456 kb on + strand, within ABI39_RS21050 at 5183.571 kb on - strand, within ABI39_RS21050 at 5183.578 kb on - strand, within ABI39_RS21050 at 5183.585 kb on + strand, within ABI39_RS21050 at 5183.696 kb on + strand, within ABI39_RS21050 at 5183.696 kb on + strand, within ABI39_RS21050 at 5183.697 kb on - strand, within ABI39_RS21050
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato; autoclaved 2.5 mg/ml (C) remove 5,180,927 + +0.9 5,180,968 + -1.1 5,180,968 + -0.4 5,181,029 - -0.5 5,181,148 - +0.7 5,181,250 - +0.2 5,181,267 - +0.0 5,181,275 + +0.0 5,181,363 - -1.3 5,181,363 - -0.5 5,181,403 + ABI39_RS21040 0.13 +0.1 5,181,427 + ABI39_RS21040 0.22 +0.1 5,181,478 - ABI39_RS21040 0.42 -0.5 5,181,496 + ABI39_RS21040 0.49 +0.6 5,181,536 + ABI39_RS21040 0.64 +1.4 5,181,537 - ABI39_RS21040 0.64 +1.8 5,181,551 - ABI39_RS21040 0.70 -0.4 5,181,608 - -0.3 5,181,624 - +1.2 5,181,717 + -2.8 5,181,718 - -3.4 5,181,718 - -3.8 5,181,721 + -3.8 5,181,725 + -3.1 5,181,776 + -2.2 5,181,783 - -2.5 5,181,797 + -0.2 5,181,877 + -0.7 5,181,917 + -3.0 5,182,292 + ABI39_RS21045 0.34 -3.6 5,182,449 - ABI39_RS21045 0.47 -4.4 5,182,449 - ABI39_RS21045 0.47 -3.5 5,182,451 + ABI39_RS21045 0.47 -1.1 5,182,566 - ABI39_RS21045 0.57 -1.3 5,182,574 + ABI39_RS21045 0.57 -2.1 5,182,628 + ABI39_RS21045 0.62 -1.8 5,182,628 + ABI39_RS21045 0.62 -4.1 5,182,629 - ABI39_RS21045 0.62 -2.5 5,182,633 - ABI39_RS21045 0.62 -3.6 5,182,933 + ABI39_RS21045 0.87 -3.2 5,183,091 + -1.3 5,183,128 + -0.4 5,183,200 + -4.1 5,183,212 + -5.2 5,183,227 - -4.6 5,183,271 - -3.8 5,183,456 + ABI39_RS21050 0.22 -3.8 5,183,571 - ABI39_RS21050 0.30 -4.3 5,183,578 - ABI39_RS21050 0.31 -4.7 5,183,585 + ABI39_RS21050 0.31 -3.0 5,183,696 + ABI39_RS21050 0.39 -5.3 5,183,696 + ABI39_RS21050 0.39 -3.8 5,183,697 - ABI39_RS21050 0.39 -3.6
Or see this region's nucleotide sequence