Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS17550

Experiment: Galactan from Potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Galactan from Potato; autoclaved 2.5 mg/ml (C)
4,435,732	+		ABI39_RS17545	0.17	+0.0
4,435,733	-		ABI39_RS17545	0.17	+2.3
4,435,733	-		ABI39_RS17545	0.17	+1.1
4,435,735	-		ABI39_RS17545	0.18	-0.1
4,435,743	-		ABI39_RS17545	0.18	-0.3
4,435,847	+		ABI39_RS17545	0.27	+0.1
4,435,847	+		ABI39_RS17545	0.27	-1.6
4,435,856	-		ABI39_RS17545	0.28	-0.5
4,435,916	+		ABI39_RS17545	0.33	-1.4
4,435,936	-		ABI39_RS17545	0.35	+0.2
4,435,938	-		ABI39_RS17545	0.35	-0.0
4,436,047	+		ABI39_RS17545	0.44	-0.3
4,436,051	+		ABI39_RS17545	0.45	+0.1
4,436,051	+		ABI39_RS17545	0.45	-0.6
4,436,051	+		ABI39_RS17545	0.45	-1.8
4,436,052	-		ABI39_RS17545	0.45	+1.7
4,436,052	-		ABI39_RS17545	0.45	-0.7
4,436,128	+		ABI39_RS17545	0.51	+0.8
4,436,128	+		ABI39_RS17545	0.51	-0.8
4,436,150	-		ABI39_RS17545	0.53	+0.9
4,436,150	-		ABI39_RS17545	0.53	+1.0
4,436,152	-		ABI39_RS17545	0.53	+0.6
4,436,160	-		ABI39_RS17545	0.54	+0.2
4,436,201	+		ABI39_RS17545	0.57	+1.3
4,436,258	-		ABI39_RS17545	0.62	+3.6
4,436,268	+		ABI39_RS17545	0.63	+0.1
4,436,276	+		ABI39_RS17545	0.64	+1.7
4,436,276	+		ABI39_RS17545	0.64	-1.2
4,436,277	-		ABI39_RS17545	0.64	-0.2
4,436,278	+		ABI39_RS17545	0.64	+2.7
4,436,278	+		ABI39_RS17545	0.64	+0.2
4,436,301	-		ABI39_RS17545	0.66	+0.0
4,436,396	-		ABI39_RS17545	0.74	-0.6
4,436,424	+		ABI39_RS17545	0.76	+0.5
4,436,452	-		ABI39_RS17545	0.79	-1.7
4,436,454	+		ABI39_RS17545	0.79	+0.7
4,436,471	-		ABI39_RS17545	0.80	+0.1
4,436,472	+		ABI39_RS17545	0.80	-0.8
4,436,476	+		ABI39_RS17545	0.81	+0.4
4,436,520	-		ABI39_RS17545	0.85	+0.5
4,436,525	-		ABI39_RS17545	0.85	-0.3
4,436,540	-		ABI39_RS17545	0.86	+0.3
4,436,548	+		ABI39_RS17545	0.87	+0.4
4,436,564	-		ABI39_RS17545	0.88	+0.2
4,436,635	+				+0.7
4,436,663	+				+0.3
4,436,663	+				+0.4
4,436,664	-				+0.1
4,436,694	+				+0.6
4,436,716	-				+0.2
4,436,736	-				+0.2
4,436,777	+				+1.7
4,436,832	-		ABI39_RS17550	0.11	-0.1
4,436,864	-		ABI39_RS17550	0.14	+1.1
4,436,963	+		ABI39_RS17550	0.24	+1.6
4,436,967	-		ABI39_RS17550	0.25	+0.2
4,436,990	-		ABI39_RS17550	0.27	+2.3
4,437,021	+		ABI39_RS17550	0.30	-0.8
4,437,034	+		ABI39_RS17550	0.31	+0.3
4,437,112	-		ABI39_RS17550	0.39	-0.8
4,437,128	-		ABI39_RS17550	0.41	-0.9
4,437,146	-		ABI39_RS17550	0.42	+0.9
4,437,335	-		ABI39_RS17550	0.61	+0.3
4,437,398	+		ABI39_RS17550	0.67	-1.0
4,437,499	+		ABI39_RS17550	0.77	+0.9
4,437,517	+		ABI39_RS17550	0.79	-0.5
4,437,518	-		ABI39_RS17550	0.79	-0.2
4,437,688	+				-0.2
4,437,689	-				+0.7
4,437,752	-				-1.9
4,437,755	+				+0.1
4,437,784	+				-0.6
4,437,861	-				-0.1
4,437,861	-				+0.6
4,437,861	-				-1.5
4,437,879	-				-1.0
4,437,892	-				+0.5
4,437,912	+		ABI39_RS17555	0.12	-0.6
4,437,912	+		ABI39_RS17555	0.12	+0.6
4,437,915	-		ABI39_RS17555	0.12	+0.2
4,437,936	+		ABI39_RS17555	0.14	-3.0
4,437,936	+		ABI39_RS17555	0.14	+0.0
4,437,937	-		ABI39_RS17555	0.14	+1.1
4,437,969	-		ABI39_RS17555	0.17	+0.2
4,437,978	+		ABI39_RS17555	0.18	-1.1
4,437,979	-		ABI39_RS17555	0.18	-0.6
4,438,069	-		ABI39_RS17555	0.26	-0.2
4,438,069	-		ABI39_RS17555	0.26	-0.6
4,438,103	-		ABI39_RS17555	0.29	+0.1
4,438,105	-		ABI39_RS17555	0.29	-0.2
4,438,113	+		ABI39_RS17555	0.30	-1.0
4,438,113	+		ABI39_RS17555	0.30	+0.0
4,438,114	-		ABI39_RS17555	0.30	+1.2
4,438,116	-		ABI39_RS17555	0.30	-0.5
4,438,290	+		ABI39_RS17555	0.46	+1.6
4,438,290	+		ABI39_RS17555	0.46	-0.0
4,438,291	-		ABI39_RS17555	0.46	-0.0
4,438,291	-		ABI39_RS17555	0.46	-0.1
4,438,291	-		ABI39_RS17555	0.46	+1.4
4,438,341	+		ABI39_RS17555	0.50	+3.2
4,438,369	-		ABI39_RS17555	0.53	+0.7
4,438,422	+		ABI39_RS17555	0.58	+1.6
4,438,422	+		ABI39_RS17555	0.58	-0.8
4,438,456	-		ABI39_RS17555	0.61	+0.8
4,438,523	+		ABI39_RS17555	0.67	+0.1
4,438,620	+		ABI39_RS17555	0.75	+2.2
4,438,649	+		ABI39_RS17555	0.78	+0.2
4,438,649	+		ABI39_RS17555	0.78	-1.1
4,438,673	+		ABI39_RS17555	0.80	+0.1
4,438,674	-		ABI39_RS17555	0.80	+0.4
4,438,715	+		ABI39_RS17555	0.84	+0.4
4,438,716	-		ABI39_RS17555	0.84	-1.0