Experiment: Galactan from Potato; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS02955 and ABI39_RS02960 are separated by 271 nucleotides ABI39_RS02960 and ABI39_RS02965 are separated by 184 nucleotides
ABI39_RS02955: ABI39_RS02955 - alkaline phosphatase, at 863,208 to 863,942
_RS02955
ABI39_RS02960: ABI39_RS02960 - pyrroline-5-carboxylate reductase, at 864,214 to 864,987
_RS02960
ABI39_RS02965: ABI39_RS02965 - aminotransferase class III-fold pyridoxal phosphate-dependent enzyme, at 865,172 to 866,296
_RS02965
Position (kb) 864
865 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 863.241 kb on + strand at 863.268 kb on - strand at 863.271 kb on - strand at 863.284 kb on + strand, within ABI39_RS02955 at 863.303 kb on + strand, within ABI39_RS02955 at 863.311 kb on - strand, within ABI39_RS02955 at 863.311 kb on - strand, within ABI39_RS02955 at 863.311 kb on - strand, within ABI39_RS02955 at 863.326 kb on + strand, within ABI39_RS02955 at 863.335 kb on - strand, within ABI39_RS02955 at 863.356 kb on + strand, within ABI39_RS02955 at 863.356 kb on + strand, within ABI39_RS02955 at 863.388 kb on + strand, within ABI39_RS02955 at 863.447 kb on - strand, within ABI39_RS02955 at 863.525 kb on + strand, within ABI39_RS02955 at 863.526 kb on - strand, within ABI39_RS02955 at 863.558 kb on - strand, within ABI39_RS02955 at 863.568 kb on + strand, within ABI39_RS02955 at 863.568 kb on + strand, within ABI39_RS02955 at 863.569 kb on - strand, within ABI39_RS02955 at 863.620 kb on - strand, within ABI39_RS02955 at 863.621 kb on + strand, within ABI39_RS02955 at 863.635 kb on - strand, within ABI39_RS02955 at 863.678 kb on + strand, within ABI39_RS02955 at 863.715 kb on - strand, within ABI39_RS02955 at 863.753 kb on + strand, within ABI39_RS02955 at 863.768 kb on + strand, within ABI39_RS02955 at 863.771 kb on - strand, within ABI39_RS02955 at 863.825 kb on + strand, within ABI39_RS02955 at 863.827 kb on + strand, within ABI39_RS02955 at 863.916 kb on + strand at 863.964 kb on - strand at 863.966 kb on - strand at 864.035 kb on - strand at 864.035 kb on - strand at 864.044 kb on - strand at 864.175 kb on - strand at 864.208 kb on + strand at 864.208 kb on + strand at 864.309 kb on + strand, within ABI39_RS02960 at 864.318 kb on + strand, within ABI39_RS02960 at 864.318 kb on + strand, within ABI39_RS02960 at 864.318 kb on + strand, within ABI39_RS02960 at 864.322 kb on + strand, within ABI39_RS02960 at 864.342 kb on + strand, within ABI39_RS02960 at 864.429 kb on + strand, within ABI39_RS02960 at 864.441 kb on + strand, within ABI39_RS02960 at 864.455 kb on + strand, within ABI39_RS02960 at 864.467 kb on + strand, within ABI39_RS02960 at 864.468 kb on - strand, within ABI39_RS02960 at 864.546 kb on + strand, within ABI39_RS02960 at 864.610 kb on - strand, within ABI39_RS02960 at 864.627 kb on + strand, within ABI39_RS02960 at 864.654 kb on + strand, within ABI39_RS02960 at 864.755 kb on - strand, within ABI39_RS02960 at 864.809 kb on - strand, within ABI39_RS02960 at 864.832 kb on + strand, within ABI39_RS02960 at 864.898 kb on + strand, within ABI39_RS02960 at 864.958 kb on - strand at 865.007 kb on - strand at 865.007 kb on - strand at 865.009 kb on - strand at 865.012 kb on + strand at 865.143 kb on + strand at 865.259 kb on - strand at 865.280 kb on + strand at 865.280 kb on + strand at 865.416 kb on - strand, within ABI39_RS02965 at 865.524 kb on + strand, within ABI39_RS02965 at 865.601 kb on + strand, within ABI39_RS02965 at 865.667 kb on + strand, within ABI39_RS02965 at 865.712 kb on - strand, within ABI39_RS02965 at 865.768 kb on + strand, within ABI39_RS02965 at 865.827 kb on - strand, within ABI39_RS02965 at 865.846 kb on - strand, within ABI39_RS02965 at 865.880 kb on - strand, within ABI39_RS02965
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato; autoclaved 2.5 mg/ml (C) remove 863,241 + -0.5 863,268 - -0.2 863,271 - +0.9 863,284 + ABI39_RS02955 0.10 +0.4 863,303 + ABI39_RS02955 0.13 -0.8 863,311 - ABI39_RS02955 0.14 -0.2 863,311 - ABI39_RS02955 0.14 -1.2 863,311 - ABI39_RS02955 0.14 +0.4 863,326 + ABI39_RS02955 0.16 -0.1 863,335 - ABI39_RS02955 0.17 +0.5 863,356 + ABI39_RS02955 0.20 -0.1 863,356 + ABI39_RS02955 0.20 -0.2 863,388 + ABI39_RS02955 0.24 -0.8 863,447 - ABI39_RS02955 0.33 +0.2 863,525 + ABI39_RS02955 0.43 -1.2 863,526 - ABI39_RS02955 0.43 +1.1 863,558 - ABI39_RS02955 0.48 -0.5 863,568 + ABI39_RS02955 0.49 -2.1 863,568 + ABI39_RS02955 0.49 -0.0 863,569 - ABI39_RS02955 0.49 +0.4 863,620 - ABI39_RS02955 0.56 -0.5 863,621 + ABI39_RS02955 0.56 -0.2 863,635 - ABI39_RS02955 0.58 -1.1 863,678 + ABI39_RS02955 0.64 -0.2 863,715 - ABI39_RS02955 0.69 -0.0 863,753 + ABI39_RS02955 0.74 +0.9 863,768 + ABI39_RS02955 0.76 +0.4 863,771 - ABI39_RS02955 0.77 -0.6 863,825 + ABI39_RS02955 0.84 -0.9 863,827 + ABI39_RS02955 0.84 -1.7 863,916 + -1.7 863,964 - +1.0 863,966 - +0.2 864,035 - +1.2 864,035 - +0.1 864,044 - +0.4 864,175 - -0.9 864,208 + -0.8 864,208 + -0.2 864,309 + ABI39_RS02960 0.12 -5.5 864,318 + ABI39_RS02960 0.13 -4.6 864,318 + ABI39_RS02960 0.13 -5.0 864,318 + ABI39_RS02960 0.13 -3.7 864,322 + ABI39_RS02960 0.14 -2.0 864,342 + ABI39_RS02960 0.17 -5.5 864,429 + ABI39_RS02960 0.28 -3.6 864,441 + ABI39_RS02960 0.29 -5.5 864,455 + ABI39_RS02960 0.31 -5.1 864,467 + ABI39_RS02960 0.33 -3.7 864,468 - ABI39_RS02960 0.33 -5.0 864,546 + ABI39_RS02960 0.43 -4.9 864,610 - ABI39_RS02960 0.51 -3.8 864,627 + ABI39_RS02960 0.53 -2.7 864,654 + ABI39_RS02960 0.57 -2.7 864,755 - ABI39_RS02960 0.70 -4.3 864,809 - ABI39_RS02960 0.77 -5.3 864,832 + ABI39_RS02960 0.80 -4.1 864,898 + ABI39_RS02960 0.88 -4.9 864,958 - -5.1 865,007 - -0.3 865,007 - -0.6 865,009 - -1.9 865,012 + -5.2 865,143 + -0.0 865,259 - -2.6 865,280 + -5.4 865,280 + -4.2 865,416 - ABI39_RS02965 0.22 -3.7 865,524 + ABI39_RS02965 0.31 -2.6 865,601 + ABI39_RS02965 0.38 -3.4 865,667 + ABI39_RS02965 0.44 -3.3 865,712 - ABI39_RS02965 0.48 -3.1 865,768 + ABI39_RS02965 0.53 -3.2 865,827 - ABI39_RS02965 0.58 -4.6 865,846 - ABI39_RS02965 0.60 -2.6 865,880 - ABI39_RS02965 0.63 -4.9
Or see this region's nucleotide sequence