Experiment: Galactan from Potato; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS02870 and ABI39_RS02875 are separated by 19 nucleotides ABI39_RS02875 and ABI39_RS02880 are separated by 37 nucleotides
ABI39_RS02870: ABI39_RS02870 - acetylornithine carbamoyltransferase, at 830,694 to 831,659
_RS02870
ABI39_RS02875: ABI39_RS02875 - glutamate-5-semialdehyde dehydrogenase, at 831,679 to 832,932
_RS02875
ABI39_RS02880: ABI39_RS02880 - glutamate 5-kinase, at 832,970 to 834,052
_RS02880
Position (kb) 831
832
833 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 830.964 kb on - strand, within ABI39_RS02870 at 830.964 kb on - strand, within ABI39_RS02870 at 831.041 kb on - strand, within ABI39_RS02870 at 831.263 kb on - strand, within ABI39_RS02870 at 831.295 kb on + strand, within ABI39_RS02870 at 831.296 kb on - strand, within ABI39_RS02870 at 831.459 kb on + strand, within ABI39_RS02870 at 831.482 kb on + strand, within ABI39_RS02870 at 831.647 kb on + strand at 831.652 kb on + strand at 831.652 kb on + strand at 831.673 kb on - strand at 831.675 kb on - strand at 831.677 kb on + strand at 831.688 kb on + strand at 831.708 kb on + strand at 831.778 kb on - strand at 831.782 kb on - strand at 831.839 kb on + strand, within ABI39_RS02875 at 831.912 kb on + strand, within ABI39_RS02875 at 831.926 kb on + strand, within ABI39_RS02875 at 831.964 kb on - strand, within ABI39_RS02875 at 832.085 kb on + strand, within ABI39_RS02875 at 832.153 kb on + strand, within ABI39_RS02875 at 832.313 kb on + strand, within ABI39_RS02875 at 832.313 kb on + strand, within ABI39_RS02875 at 832.344 kb on + strand, within ABI39_RS02875 at 832.421 kb on + strand, within ABI39_RS02875 at 832.477 kb on - strand, within ABI39_RS02875 at 832.510 kb on + strand, within ABI39_RS02875 at 832.515 kb on + strand, within ABI39_RS02875 at 832.612 kb on + strand, within ABI39_RS02875 at 832.709 kb on - strand, within ABI39_RS02875 at 832.709 kb on - strand, within ABI39_RS02875 at 832.959 kb on - strand at 832.986 kb on + strand at 832.987 kb on - strand at 832.987 kb on - strand at 832.997 kb on + strand at 832.998 kb on - strand at 833.094 kb on - strand, within ABI39_RS02880 at 833.132 kb on + strand, within ABI39_RS02880 at 833.170 kb on + strand, within ABI39_RS02880 at 833.357 kb on + strand, within ABI39_RS02880 at 833.357 kb on + strand, within ABI39_RS02880 at 833.526 kb on + strand, within ABI39_RS02880 at 833.526 kb on + strand, within ABI39_RS02880 at 833.527 kb on - strand, within ABI39_RS02880 at 833.527 kb on - strand, within ABI39_RS02880 at 833.611 kb on + strand, within ABI39_RS02880 at 833.660 kb on + strand, within ABI39_RS02880 at 833.660 kb on + strand, within ABI39_RS02880 at 833.765 kb on - strand, within ABI39_RS02880
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato; autoclaved 2.5 mg/ml (C) remove 830,964 - ABI39_RS02870 0.28 -5.5 830,964 - ABI39_RS02870 0.28 -3.2 831,041 - ABI39_RS02870 0.36 -5.0 831,263 - ABI39_RS02870 0.59 -4.6 831,295 + ABI39_RS02870 0.62 -6.1 831,296 - ABI39_RS02870 0.62 -0.9 831,459 + ABI39_RS02870 0.79 -3.3 831,482 + ABI39_RS02870 0.82 -4.9 831,647 + -4.6 831,652 + -3.5 831,652 + -4.3 831,673 - -0.7 831,675 - +1.2 831,677 + -4.8 831,688 + -4.4 831,708 + -5.7 831,778 - -3.5 831,782 - -5.3 831,839 + ABI39_RS02875 0.13 -5.4 831,912 + ABI39_RS02875 0.19 -6.1 831,926 + ABI39_RS02875 0.20 -5.2 831,964 - ABI39_RS02875 0.23 -5.9 832,085 + ABI39_RS02875 0.32 -3.7 832,153 + ABI39_RS02875 0.38 -2.4 832,313 + ABI39_RS02875 0.51 -4.9 832,313 + ABI39_RS02875 0.51 -4.8 832,344 + ABI39_RS02875 0.53 -3.8 832,421 + ABI39_RS02875 0.59 -4.4 832,477 - ABI39_RS02875 0.64 -3.7 832,510 + ABI39_RS02875 0.66 -5.2 832,515 + ABI39_RS02875 0.67 -3.6 832,612 + ABI39_RS02875 0.74 -3.6 832,709 - ABI39_RS02875 0.82 -2.9 832,709 - ABI39_RS02875 0.82 -2.7 832,959 - -0.5 832,986 + -4.3 832,987 - -5.4 832,987 - -3.1 832,997 + -5.0 832,998 - -3.4 833,094 - ABI39_RS02880 0.11 -5.0 833,132 + ABI39_RS02880 0.15 -4.3 833,170 + ABI39_RS02880 0.18 -3.4 833,357 + ABI39_RS02880 0.36 -4.4 833,357 + ABI39_RS02880 0.36 -3.4 833,526 + ABI39_RS02880 0.51 -3.0 833,526 + ABI39_RS02880 0.51 -4.6 833,527 - ABI39_RS02880 0.51 -6.3 833,527 - ABI39_RS02880 0.51 -4.5 833,611 + ABI39_RS02880 0.59 -4.7 833,660 + ABI39_RS02880 0.64 -3.5 833,660 + ABI39_RS02880 0.64 -3.9 833,765 - ABI39_RS02880 0.73 -4.0
Or see this region's nucleotide sequence