Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS02290

Experiment: Galactan from Potato; autoclaved 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS02285 and ABI39_RS02290 are separated by 21 nucleotidesABI39_RS02290 and ABI39_RS02295 are separated by 2 nucleotides ABI39_RS02285: ABI39_RS02285 - DNA mismatch repair endonuclease MutL, at 665,497 to 667,365 _RS02285 ABI39_RS02290: ABI39_RS02290 - hypothetical protein, at 667,387 to 667,683 _RS02290 ABI39_RS02295: ABI39_RS02295 - hypothetical protein, at 667,686 to 669,353 _RS02295 Position (kb) 667 668Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 667.366 kb on - strandat 667.368 kb on - strandat 667.368 kb on - strandat 667.368 kb on - strandat 667.375 kb on - strandat 667.510 kb on - strand, within ABI39_RS02290at 667.510 kb on - strand, within ABI39_RS02290at 667.632 kb on - strand, within ABI39_RS02290at 667.636 kb on - strand, within ABI39_RS02290at 667.638 kb on - strand, within ABI39_RS02290at 667.688 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Galactan from Potato; autoclaved 2.5 mg/ml (C)
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667,366 - -0.6
667,368 - -0.2
667,368 - -1.2
667,368 - -0.6
667,375 - -0.7
667,510 - ABI39_RS02290 0.41 -1.8
667,510 - ABI39_RS02290 0.41 -1.7
667,632 - ABI39_RS02290 0.82 -1.4
667,636 - ABI39_RS02290 0.84 -4.1
667,638 - ABI39_RS02290 0.85 -3.5
667,688 - +0.3

Or see this region's nucleotide sequence