Experiment: Galactan from Potato; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS01730 and ABI39_RS01735 overlap by 1 nucleotides ABI39_RS01735 and ABI39_RS01740 are separated by 454 nucleotides
ABI39_RS01730: ABI39_RS01730 - electron transfer flavoprotein subunit alpha/FixB family protein, at 519,011 to 520,030
_RS01730
ABI39_RS01735: ABI39_RS01735 - acyl-CoA dehydrogenase family protein, at 520,030 to 521,736
_RS01735
ABI39_RS01740: ABI39_RS01740 - histidine decarboxylase, at 522,191 to 522,799
_RS01740
Position (kb) 520
521
522 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 519.100 kb on + strand at 519.168 kb on + strand, within ABI39_RS01730 at 519.226 kb on + strand, within ABI39_RS01730 at 519.434 kb on + strand, within ABI39_RS01730 at 519.608 kb on + strand, within ABI39_RS01730 at 519.609 kb on - strand, within ABI39_RS01730 at 519.612 kb on + strand, within ABI39_RS01730 at 519.670 kb on + strand, within ABI39_RS01730 at 519.670 kb on + strand, within ABI39_RS01730 at 519.703 kb on + strand, within ABI39_RS01730 at 519.860 kb on - strand, within ABI39_RS01730 at 520.007 kb on + strand at 520.028 kb on + strand at 520.067 kb on - strand at 520.067 kb on - strand at 520.128 kb on + strand at 520.186 kb on - strand at 520.288 kb on + strand, within ABI39_RS01735 at 520.325 kb on + strand, within ABI39_RS01735 at 520.603 kb on - strand, within ABI39_RS01735 at 520.696 kb on - strand, within ABI39_RS01735 at 520.769 kb on + strand, within ABI39_RS01735 at 520.770 kb on - strand, within ABI39_RS01735 at 520.790 kb on + strand, within ABI39_RS01735 at 521.022 kb on - strand, within ABI39_RS01735 at 521.184 kb on - strand, within ABI39_RS01735 at 521.196 kb on + strand, within ABI39_RS01735 at 521.228 kb on - strand, within ABI39_RS01735 at 521.246 kb on - strand, within ABI39_RS01735 at 521.290 kb on + strand, within ABI39_RS01735 at 521.309 kb on - strand, within ABI39_RS01735 at 521.413 kb on - strand, within ABI39_RS01735 at 521.645 kb on + strand at 521.645 kb on + strand at 521.646 kb on - strand at 521.652 kb on - strand at 521.815 kb on + strand at 521.816 kb on - strand at 521.886 kb on + strand at 521.905 kb on + strand at 521.920 kb on - strand at 521.944 kb on + strand at 521.978 kb on - strand at 522.055 kb on - strand at 522.101 kb on - strand at 522.239 kb on + strand at 522.310 kb on + strand, within ABI39_RS01740 at 522.339 kb on - strand, within ABI39_RS01740 at 522.339 kb on - strand, within ABI39_RS01740 at 522.417 kb on + strand, within ABI39_RS01740 at 522.527 kb on - strand, within ABI39_RS01740 at 522.607 kb on + strand, within ABI39_RS01740 at 522.651 kb on - strand, within ABI39_RS01740 at 522.664 kb on + strand, within ABI39_RS01740 at 522.688 kb on - strand, within ABI39_RS01740
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato; autoclaved 2.5 mg/ml (C) remove 519,100 + +0.2 519,168 + ABI39_RS01730 0.15 -2.1 519,226 + ABI39_RS01730 0.21 -0.4 519,434 + ABI39_RS01730 0.41 -1.3 519,608 + ABI39_RS01730 0.59 -1.6 519,609 - ABI39_RS01730 0.59 -1.9 519,612 + ABI39_RS01730 0.59 -1.6 519,670 + ABI39_RS01730 0.65 -1.5 519,670 + ABI39_RS01730 0.65 -3.9 519,703 + ABI39_RS01730 0.68 -3.0 519,860 - ABI39_RS01730 0.83 -0.8 520,007 + -1.4 520,028 + -1.3 520,067 - -2.5 520,067 - -1.4 520,128 + -3.0 520,186 - -2.1 520,288 + ABI39_RS01735 0.15 -0.6 520,325 + ABI39_RS01735 0.17 -1.4 520,603 - ABI39_RS01735 0.34 -0.8 520,696 - ABI39_RS01735 0.39 -2.4 520,769 + ABI39_RS01735 0.43 -1.1 520,770 - ABI39_RS01735 0.43 -1.9 520,790 + ABI39_RS01735 0.45 -1.7 521,022 - ABI39_RS01735 0.58 -0.6 521,184 - ABI39_RS01735 0.68 -2.3 521,196 + ABI39_RS01735 0.68 -1.4 521,228 - ABI39_RS01735 0.70 -2.4 521,246 - ABI39_RS01735 0.71 -3.0 521,290 + ABI39_RS01735 0.74 -2.6 521,309 - ABI39_RS01735 0.75 -0.3 521,413 - ABI39_RS01735 0.81 -1.4 521,645 + -0.6 521,645 + -1.4 521,646 - -1.0 521,652 - -1.0 521,815 + +2.7 521,816 - -0.4 521,886 + +0.0 521,905 + -0.2 521,920 - -0.0 521,944 + +1.2 521,978 - +0.9 522,055 - -0.3 522,101 - +1.8 522,239 + +1.8 522,310 + ABI39_RS01740 0.20 +2.2 522,339 - ABI39_RS01740 0.24 +2.6 522,339 - ABI39_RS01740 0.24 +1.7 522,417 + ABI39_RS01740 0.37 +1.2 522,527 - ABI39_RS01740 0.55 +0.8 522,607 + ABI39_RS01740 0.68 +2.7 522,651 - ABI39_RS01740 0.76 +1.1 522,664 + ABI39_RS01740 0.78 +4.5 522,688 - ABI39_RS01740 0.82 +0.7
Or see this region's nucleotide sequence