Experiment: Galactan from Potato; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS01330 and ABI39_RS01335 are separated by 161 nucleotides ABI39_RS01335 and ABI39_RS01340 overlap by 8 nucleotides ABI39_RS01340 and ABI39_RS01345 overlap by 4 nucleotides ABI39_RS01345 and ABI39_RS01350 are separated by 27 nucleotides
ABI39_RS01330: ABI39_RS01330 - NADP-specific glutamate dehydrogenase, at 411,901 to 413,238
_RS01330
ABI39_RS01335: ABI39_RS01335 - hypothetical protein, at 413,400 to 413,792
_RS01335
ABI39_RS01340: ABI39_RS01340 - DUF3440 domain-containing protein, at 413,785 to 415,086
_RS01340
ABI39_RS01345: ABI39_RS01345 - ParB-like nuclease domain-containing protein, at 415,083 to 415,595
_RS01345
ABI39_RS01350: ABI39_RS01350 - hypothetical protein, at 415,623 to 417,410
_RS01350
Position (kb) 413
414
415
416 Strain fitness (log2 ratio) -2
-1
0
1
2 at 412.831 kb on - strand, within ABI39_RS01330 at 412.835 kb on + strand, within ABI39_RS01330 at 412.836 kb on - strand, within ABI39_RS01330 at 412.839 kb on + strand, within ABI39_RS01330 at 412.987 kb on + strand, within ABI39_RS01330 at 412.987 kb on + strand, within ABI39_RS01330 at 412.988 kb on - strand, within ABI39_RS01330 at 413.022 kb on - strand, within ABI39_RS01330 at 413.026 kb on - strand, within ABI39_RS01330 at 413.061 kb on + strand, within ABI39_RS01330 at 413.091 kb on + strand, within ABI39_RS01330 at 413.106 kb on + strand at 413.116 kb on - strand at 413.158 kb on + strand at 413.160 kb on + strand at 413.204 kb on + strand at 413.205 kb on - strand at 413.248 kb on - strand at 413.283 kb on - strand at 413.289 kb on + strand at 413.367 kb on + strand at 413.416 kb on + strand at 413.597 kb on + strand, within ABI39_RS01335 at 413.607 kb on + strand, within ABI39_RS01335 at 413.610 kb on + strand, within ABI39_RS01335 at 413.667 kb on - strand, within ABI39_RS01335 at 413.755 kb on - strand at 413.756 kb on + strand at 413.794 kb on - strand at 413.794 kb on - strand at 413.869 kb on - strand at 413.919 kb on - strand, within ABI39_RS01340 at 413.930 kb on - strand, within ABI39_RS01340 at 413.968 kb on + strand, within ABI39_RS01340 at 414.010 kb on + strand, within ABI39_RS01340 at 414.175 kb on - strand, within ABI39_RS01340 at 414.196 kb on + strand, within ABI39_RS01340 at 414.197 kb on - strand, within ABI39_RS01340 at 414.336 kb on + strand, within ABI39_RS01340 at 414.356 kb on - strand, within ABI39_RS01340 at 414.383 kb on + strand, within ABI39_RS01340 at 414.411 kb on + strand, within ABI39_RS01340 at 414.415 kb on + strand, within ABI39_RS01340 at 414.415 kb on + strand, within ABI39_RS01340 at 414.415 kb on + strand, within ABI39_RS01340 at 414.438 kb on - strand, within ABI39_RS01340 at 414.448 kb on + strand, within ABI39_RS01340 at 414.494 kb on - strand, within ABI39_RS01340 at 414.694 kb on + strand, within ABI39_RS01340 at 414.711 kb on + strand, within ABI39_RS01340 at 414.715 kb on + strand, within ABI39_RS01340 at 414.825 kb on + strand, within ABI39_RS01340 at 414.958 kb on + strand at 414.966 kb on + strand at 414.999 kb on - strand at 415.158 kb on - strand, within ABI39_RS01345 at 415.223 kb on + strand, within ABI39_RS01345 at 415.238 kb on - strand, within ABI39_RS01345 at 415.248 kb on - strand, within ABI39_RS01345 at 415.264 kb on + strand, within ABI39_RS01345 at 415.264 kb on + strand, within ABI39_RS01345 at 415.264 kb on + strand, within ABI39_RS01345 at 415.264 kb on + strand, within ABI39_RS01345 at 415.266 kb on + strand, within ABI39_RS01345 at 415.267 kb on - strand, within ABI39_RS01345 at 415.267 kb on - strand, within ABI39_RS01345 at 415.442 kb on - strand, within ABI39_RS01345 at 415.540 kb on + strand, within ABI39_RS01345 at 415.593 kb on + strand at 415.731 kb on - strand at 415.843 kb on - strand, within ABI39_RS01350 at 415.891 kb on + strand, within ABI39_RS01350 at 415.892 kb on - strand, within ABI39_RS01350 at 415.987 kb on + strand, within ABI39_RS01350
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato; autoclaved 2.5 mg/ml (C) remove 412,831 - ABI39_RS01330 0.70 -1.0 412,835 + ABI39_RS01330 0.70 -0.5 412,836 - ABI39_RS01330 0.70 +1.4 412,839 + ABI39_RS01330 0.70 +0.1 412,987 + ABI39_RS01330 0.81 +1.0 412,987 + ABI39_RS01330 0.81 -0.5 412,988 - ABI39_RS01330 0.81 -0.6 413,022 - ABI39_RS01330 0.84 +1.2 413,026 - ABI39_RS01330 0.84 -0.1 413,061 + ABI39_RS01330 0.87 +0.0 413,091 + ABI39_RS01330 0.89 -0.4 413,106 + -0.5 413,116 - -0.2 413,158 + +0.0 413,160 + -0.4 413,204 + -0.2 413,205 - -0.8 413,248 - +0.3 413,283 - +2.1 413,289 + -0.7 413,367 + +2.5 413,416 + -1.0 413,597 + ABI39_RS01335 0.50 +0.9 413,607 + ABI39_RS01335 0.53 +1.0 413,610 + ABI39_RS01335 0.53 +0.9 413,667 - ABI39_RS01335 0.68 -0.1 413,755 - -1.2 413,756 + +0.0 413,794 - -1.5 413,794 - -0.9 413,869 - +0.3 413,919 - ABI39_RS01340 0.10 +0.2 413,930 - ABI39_RS01340 0.11 -0.2 413,968 + ABI39_RS01340 0.14 -1.5 414,010 + ABI39_RS01340 0.17 -0.4 414,175 - ABI39_RS01340 0.30 -0.1 414,196 + ABI39_RS01340 0.32 -0.4 414,197 - ABI39_RS01340 0.32 -1.0 414,336 + ABI39_RS01340 0.42 +0.0 414,356 - ABI39_RS01340 0.44 -1.2 414,383 + ABI39_RS01340 0.46 +0.1 414,411 + ABI39_RS01340 0.48 -0.6 414,415 + ABI39_RS01340 0.48 -1.2 414,415 + ABI39_RS01340 0.48 -2.6 414,415 + ABI39_RS01340 0.48 +0.0 414,438 - ABI39_RS01340 0.50 -0.8 414,448 + ABI39_RS01340 0.51 +0.2 414,494 - ABI39_RS01340 0.54 +0.4 414,694 + ABI39_RS01340 0.70 -0.6 414,711 + ABI39_RS01340 0.71 -2.3 414,715 + ABI39_RS01340 0.71 +0.0 414,825 + ABI39_RS01340 0.80 -0.7 414,958 + -0.2 414,966 + -1.5 414,999 - -0.4 415,158 - ABI39_RS01345 0.15 +0.1 415,223 + ABI39_RS01345 0.27 -0.7 415,238 - ABI39_RS01345 0.30 -0.3 415,248 - ABI39_RS01345 0.32 -0.2 415,264 + ABI39_RS01345 0.35 -0.1 415,264 + ABI39_RS01345 0.35 -1.2 415,264 + ABI39_RS01345 0.35 -1.5 415,264 + ABI39_RS01345 0.35 -0.6 415,266 + ABI39_RS01345 0.36 -0.0 415,267 - ABI39_RS01345 0.36 -1.1 415,267 - ABI39_RS01345 0.36 -0.5 415,442 - ABI39_RS01345 0.70 -1.7 415,540 + ABI39_RS01345 0.89 -0.0 415,593 + +0.8 415,731 - -0.6 415,843 - ABI39_RS01350 0.12 +1.1 415,891 + ABI39_RS01350 0.15 +0.1 415,892 - ABI39_RS01350 0.15 +0.1 415,987 + ABI39_RS01350 0.20 -0.1
Or see this region's nucleotide sequence