Experiment: Galactan from Potato; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS01295 and ABI39_RS01300 are separated by 461 nucleotides ABI39_RS01300 and ABI39_RS01305 are separated by 155 nucleotides
ABI39_RS01295: ABI39_RS01295 - NADP-dependent malic enzyme, at 399,808 to 402,093
_RS01295
ABI39_RS01300: ABI39_RS01300 - NADP-specific glutamate dehydrogenase, at 402,555 to 403,889
_RS01300
ABI39_RS01305: ABI39_RS01305 - PCMD domain-containing protein, at 404,045 to 405,193
_RS01305
Position (kb) 402
403
404 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 401.640 kb on + strand, within ABI39_RS01295 at 401.762 kb on - strand, within ABI39_RS01295 at 401.793 kb on - strand, within ABI39_RS01295 at 401.793 kb on - strand, within ABI39_RS01295 at 401.829 kb on + strand, within ABI39_RS01295 at 401.834 kb on + strand, within ABI39_RS01295 at 401.889 kb on - strand at 401.919 kb on + strand at 401.924 kb on - strand at 401.992 kb on - strand at 402.096 kb on - strand at 402.157 kb on + strand at 402.289 kb on - strand at 402.637 kb on + strand at 402.723 kb on + strand, within ABI39_RS01300 at 402.758 kb on + strand, within ABI39_RS01300 at 402.795 kb on - strand, within ABI39_RS01300 at 402.903 kb on - strand, within ABI39_RS01300 at 403.187 kb on + strand, within ABI39_RS01300 at 403.316 kb on - strand, within ABI39_RS01300 at 403.347 kb on + strand, within ABI39_RS01300 at 403.418 kb on + strand, within ABI39_RS01300 at 403.453 kb on - strand, within ABI39_RS01300 at 403.456 kb on + strand, within ABI39_RS01300 at 403.564 kb on + strand, within ABI39_RS01300 at 403.673 kb on - strand, within ABI39_RS01300 at 403.735 kb on + strand, within ABI39_RS01300 at 403.755 kb on - strand, within ABI39_RS01300 at 403.783 kb on + strand at 403.911 kb on + strand at 403.912 kb on - strand at 403.912 kb on - strand at 403.915 kb on + strand at 404.012 kb on + strand at 404.017 kb on - strand at 404.017 kb on - strand at 404.018 kb on + strand at 404.032 kb on - strand at 404.470 kb on + strand, within ABI39_RS01305 at 404.484 kb on - strand, within ABI39_RS01305 at 404.487 kb on - strand, within ABI39_RS01305 at 404.718 kb on + strand, within ABI39_RS01305 at 404.785 kb on + strand, within ABI39_RS01305 at 404.843 kb on + strand, within ABI39_RS01305 at 404.844 kb on - strand, within ABI39_RS01305 at 404.873 kb on + strand, within ABI39_RS01305 at 404.874 kb on - strand, within ABI39_RS01305
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato; autoclaved 2.5 mg/ml (C) remove 401,640 + ABI39_RS01295 0.80 +0.6 401,762 - ABI39_RS01295 0.85 -0.2 401,793 - ABI39_RS01295 0.87 +0.4 401,793 - ABI39_RS01295 0.87 -1.6 401,829 + ABI39_RS01295 0.88 -2.5 401,834 + ABI39_RS01295 0.89 -0.7 401,889 - -0.5 401,919 + +0.7 401,924 - -0.9 401,992 - -0.8 402,096 - +0.3 402,157 + -1.6 402,289 - -0.2 402,637 + -2.1 402,723 + ABI39_RS01300 0.13 -1.9 402,758 + ABI39_RS01300 0.15 -2.0 402,795 - ABI39_RS01300 0.18 -1.4 402,903 - ABI39_RS01300 0.26 -1.8 403,187 + ABI39_RS01300 0.47 -3.5 403,316 - ABI39_RS01300 0.57 -1.5 403,347 + ABI39_RS01300 0.59 -2.8 403,418 + ABI39_RS01300 0.65 -0.4 403,453 - ABI39_RS01300 0.67 -2.6 403,456 + ABI39_RS01300 0.67 -2.2 403,564 + ABI39_RS01300 0.76 -2.9 403,673 - ABI39_RS01300 0.84 -2.0 403,735 + ABI39_RS01300 0.88 -3.9 403,755 - ABI39_RS01300 0.90 -3.4 403,783 + -2.5 403,911 + -0.8 403,912 - +0.5 403,912 - -1.0 403,915 + +0.3 404,012 + -0.6 404,017 - +0.4 404,017 - +1.1 404,018 + -0.5 404,032 - +0.1 404,470 + ABI39_RS01305 0.37 +1.6 404,484 - ABI39_RS01305 0.38 -0.1 404,487 - ABI39_RS01305 0.38 -0.9 404,718 + ABI39_RS01305 0.59 -0.7 404,785 + ABI39_RS01305 0.64 +0.3 404,843 + ABI39_RS01305 0.69 -0.8 404,844 - ABI39_RS01305 0.70 +1.2 404,873 + ABI39_RS01305 0.72 -0.1 404,874 - ABI39_RS01305 0.72 +0.4
Or see this region's nucleotide sequence