Experiment: RB51
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_24460 and NOLOHH_24465 are separated by 20 nucleotides NOLOHH_24465 and NOLOHH_24470 are separated by 60 nucleotides NOLOHH_24470 and NOLOHH_24475 are separated by 18 nucleotides NOLOHH_24475 and NOLOHH_24480 are separated by 17 nucleotides
NOLOHH_24460: NOLOHH_24460 - LngX2, at 37,178 to 37,399
_24460
NOLOHH_24465: NOLOHH_24465 - Longus pilus structural subunit, at 37,420 to 38,133
_24465
NOLOHH_24470: NOLOHH_24470 - prepilin-type cleavage/methylation domain-containing protein, at 38,194 to 39,765
_24470
NOLOHH_24475: NOLOHH_24475 - pilus assembly protein, at 39,784 to 40,197
_24475
NOLOHH_24480: NOLOHH_24480 - type II and III secretion system protein, at 40,215 to 41,672
_24480
Position (kb) 38
39
40 Strain fitness (log2 ratio) -1
0
1 at 37.296 kb on + strand, within NOLOHH_24460 at 37.298 kb on + strand, within NOLOHH_24460 at 37.569 kb on - strand, within NOLOHH_24465 at 37.637 kb on + strand, within NOLOHH_24465 at 37.637 kb on + strand, within NOLOHH_24465 at 37.638 kb on - strand, within NOLOHH_24465 at 37.660 kb on + strand, within NOLOHH_24465 at 37.881 kb on - strand, within NOLOHH_24465 at 38.066 kb on + strand at 38.176 kb on + strand at 38.271 kb on + strand at 38.276 kb on - strand at 38.568 kb on + strand, within NOLOHH_24470 at 39.334 kb on - strand, within NOLOHH_24470 at 39.763 kb on + strand at 39.851 kb on + strand, within NOLOHH_24475 at 40.702 kb on - strand, within NOLOHH_24480
Per-strain Table
Position Strand Gene LocusTag Fraction RB51 remove 37,296 + NOLOHH_24460 0.53 +0.3 37,298 + NOLOHH_24460 0.54 +0.9 37,569 - NOLOHH_24465 0.21 +0.9 37,637 + NOLOHH_24465 0.30 -1.6 37,637 + NOLOHH_24465 0.30 -0.6 37,638 - NOLOHH_24465 0.31 -0.6 37,660 + NOLOHH_24465 0.34 -1.2 37,881 - NOLOHH_24465 0.65 +0.7 38,066 + -0.9 38,176 + -1.6 38,271 + +1.0 38,276 - -1.1 38,568 + NOLOHH_24470 0.24 -0.6 39,334 - NOLOHH_24470 0.73 -1.6 39,763 + -1.0 39,851 + NOLOHH_24475 0.16 +0.8 40,702 - NOLOHH_24480 0.33 +0.9
Or see this region's nucleotide sequence