Experiment: RB51
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hilD and NOLOHH_24455 are separated by 13 nucleotides NOLOHH_24455 and NOLOHH_24460 are separated by 55 nucleotides NOLOHH_24460 and NOLOHH_24465 are separated by 20 nucleotides NOLOHH_24465 and NOLOHH_24470 are separated by 60 nucleotides
NOLOHH_24450: hilD - transcriptional regulator HilD, at 35,769 to 36,665
hilD
NOLOHH_24455: NOLOHH_24455 - lytic transglycosylase, at 36,679 to 37,122
_24455
NOLOHH_24460: NOLOHH_24460 - LngX2, at 37,178 to 37,399
_24460
NOLOHH_24465: NOLOHH_24465 - Longus pilus structural subunit, at 37,420 to 38,133
_24465
NOLOHH_24470: NOLOHH_24470 - prepilin-type cleavage/methylation domain-containing protein, at 38,194 to 39,765
_24470
Position (kb) 37
38
39 Strain fitness (log2 ratio) -1
0
1 at 36.611 kb on + strand at 37.296 kb on + strand, within NOLOHH_24460 at 37.298 kb on + strand, within NOLOHH_24460 at 37.569 kb on - strand, within NOLOHH_24465 at 37.637 kb on + strand, within NOLOHH_24465 at 37.637 kb on + strand, within NOLOHH_24465 at 37.638 kb on - strand, within NOLOHH_24465 at 37.660 kb on + strand, within NOLOHH_24465 at 37.881 kb on - strand, within NOLOHH_24465 at 38.066 kb on + strand at 38.176 kb on + strand at 38.271 kb on + strand at 38.276 kb on - strand at 38.568 kb on + strand, within NOLOHH_24470
Per-strain Table
Position Strand Gene LocusTag Fraction RB51 remove 36,611 + +0.9 37,296 + NOLOHH_24460 0.53 +0.3 37,298 + NOLOHH_24460 0.54 +0.9 37,569 - NOLOHH_24465 0.21 +0.9 37,637 + NOLOHH_24465 0.30 -1.6 37,637 + NOLOHH_24465 0.30 -0.6 37,638 - NOLOHH_24465 0.31 -0.6 37,660 + NOLOHH_24465 0.34 -1.2 37,881 - NOLOHH_24465 0.65 +0.7 38,066 + -0.9 38,176 + -1.6 38,271 + +1.0 38,276 - -1.1 38,568 + NOLOHH_24470 0.24 -0.6
Or see this region's nucleotide sequence