Strain Fitness in Escherichia coli ECOR27 around NOLOHH_22795

Experiment: RB51

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_22790 and NOLOHH_22795 are separated by 121 nucleotidesNOLOHH_22795 and NOLOHH_22800 are separated by 89 nucleotides NOLOHH_22790: NOLOHH_22790 - phage head-binding domain-containing protein, at 4,500,137 to 4,502,116 _22790 NOLOHH_22795: NOLOHH_22795 - toxin-antitoxin system HicB family antitoxin, at 4,502,238 to 4,502,498 _22795 NOLOHH_22800: NOLOHH_22800 - DNA transfer protein, at 4,502,588 to 4,504,585 _22800 Position (kb) 4502 4503Strain fitness (log2 ratio) -1 0 1 2at 4501.315 kb on + strand, within NOLOHH_22790at 4501.404 kb on - strand, within NOLOHH_22790at 4501.410 kb on + strand, within NOLOHH_22790at 4501.584 kb on + strand, within NOLOHH_22790at 4501.849 kb on + strand, within NOLOHH_22790at 4501.849 kb on + strand, within NOLOHH_22790at 4501.891 kb on + strand, within NOLOHH_22790at 4501.892 kb on - strand, within NOLOHH_22790at 4501.893 kb on + strand, within NOLOHH_22790at 4501.893 kb on + strand, within NOLOHH_22790at 4501.893 kb on + strand, within NOLOHH_22790at 4501.894 kb on - strand, within NOLOHH_22790at 4502.022 kb on + strandat 4502.047 kb on + strandat 4502.048 kb on - strandat 4502.138 kb on + strandat 4502.139 kb on - strandat 4502.190 kb on - strandat 4502.241 kb on + strandat 4502.242 kb on - strandat 4502.303 kb on + strand, within NOLOHH_22795at 4502.476 kb on + strandat 4502.476 kb on + strandat 4502.477 kb on - strandat 4502.477 kb on - strandat 4502.477 kb on - strandat 4502.479 kb on - strandat 4502.549 kb on + strandat 4502.553 kb on + strandat 4502.589 kb on + strandat 4502.612 kb on - strandat 4502.743 kb on + strandat 4502.743 kb on + strandat 4502.921 kb on - strand, within NOLOHH_22800at 4502.921 kb on - strand, within NOLOHH_22800at 4503.056 kb on - strand, within NOLOHH_22800at 4503.057 kb on + strand, within NOLOHH_22800at 4503.058 kb on - strand, within NOLOHH_22800at 4503.058 kb on - strand, within NOLOHH_22800at 4503.058 kb on - strand, within NOLOHH_22800at 4503.092 kb on + strand, within NOLOHH_22800at 4503.183 kb on + strand, within NOLOHH_22800at 4503.184 kb on - strand, within NOLOHH_22800at 4503.218 kb on - strand, within NOLOHH_22800at 4503.273 kb on + strand, within NOLOHH_22800at 4503.274 kb on - strand, within NOLOHH_22800at 4503.274 kb on - strand, within NOLOHH_22800at 4503.363 kb on - strand, within NOLOHH_22800at 4503.485 kb on - strand, within NOLOHH_22800at 4503.488 kb on + strand, within NOLOHH_22800

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Per-strain Table

Position Strand Gene LocusTag Fraction RB51
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4,501,315 + NOLOHH_22790 0.59 +0.9
4,501,404 - NOLOHH_22790 0.64 +0.8
4,501,410 + NOLOHH_22790 0.64 +1.0
4,501,584 + NOLOHH_22790 0.73 +0.5
4,501,849 + NOLOHH_22790 0.86 -0.0
4,501,849 + NOLOHH_22790 0.86 +0.1
4,501,891 + NOLOHH_22790 0.89 +0.4
4,501,892 - NOLOHH_22790 0.89 -0.9
4,501,893 + NOLOHH_22790 0.89 -0.3
4,501,893 + NOLOHH_22790 0.89 -1.4
4,501,893 + NOLOHH_22790 0.89 +0.5
4,501,894 - NOLOHH_22790 0.89 -1.1
4,502,022 + -0.8
4,502,047 + +0.6
4,502,048 - +0.7
4,502,138 + +1.6
4,502,139 - +0.7
4,502,190 - -0.2
4,502,241 + -1.5
4,502,242 - -0.7
4,502,303 + NOLOHH_22795 0.25 -1.1
4,502,476 + -0.2
4,502,476 + -0.4
4,502,477 - -0.1
4,502,477 - +0.8
4,502,477 - -0.2
4,502,479 - -1.1
4,502,549 + +0.6
4,502,553 + +0.6
4,502,589 + +0.3
4,502,612 - +0.6
4,502,743 + +0.6
4,502,743 + +0.2
4,502,921 - NOLOHH_22800 0.17 -0.4
4,502,921 - NOLOHH_22800 0.17 -0.5
4,503,056 - NOLOHH_22800 0.23 -0.5
4,503,057 + NOLOHH_22800 0.23 +0.4
4,503,058 - NOLOHH_22800 0.24 +0.3
4,503,058 - NOLOHH_22800 0.24 -0.9
4,503,058 - NOLOHH_22800 0.24 -1.2
4,503,092 + NOLOHH_22800 0.25 -0.8
4,503,183 + NOLOHH_22800 0.30 +0.6
4,503,184 - NOLOHH_22800 0.30 +1.8
4,503,218 - NOLOHH_22800 0.32 +0.2
4,503,273 + NOLOHH_22800 0.34 -0.1
4,503,274 - NOLOHH_22800 0.34 +1.7
4,503,274 - NOLOHH_22800 0.34 +0.0
4,503,363 - NOLOHH_22800 0.39 +1.5
4,503,485 - NOLOHH_22800 0.45 +0.2
4,503,488 + NOLOHH_22800 0.45 +0.5

Or see this region's nucleotide sequence