Strain Fitness in Escherichia coli ECOR27 around NOLOHH_22445

Experiment: RB51

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpdeI and gsiD are separated by 177 nucleotidesgsiD and gsiC are separated by 2 nucleotidesgsiC and gsiB are separated by 17 nucleotides NOLOHH_22440: pdeI - putative cyclic di-GMP phosphodiesterase PdeI, at 4,427,737 to 4,430,085 pdeI NOLOHH_22445: gsiD - glutathione ABC transporter permease GsiD, at 4,430,263 to 4,431,174 gsiD NOLOHH_22450: gsiC - glutathione ABC transporter permease GsiC, at 4,431,177 to 4,432,097 gsiC NOLOHH_22455: gsiB - glutathione ABC transporter substrate-binding protein GsiB, at 4,432,115 to 4,433,653 gsiB Position (kb) 4430 4431 4432Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4430.017 kb on - strandat 4430.017 kb on - strandat 4430.136 kb on + strandat 4430.261 kb on - strandat 4430.264 kb on + strandat 4430.340 kb on + strandat 4430.536 kb on - strand, within gsiDat 4430.572 kb on - strand, within gsiDat 4431.040 kb on + strand, within gsiDat 4431.167 kb on - strandat 4431.179 kb on - strandat 4431.185 kb on - strandat 4431.229 kb on - strandat 4431.237 kb on - strandat 4431.485 kb on + strand, within gsiCat 4431.485 kb on + strand, within gsiCat 4431.485 kb on + strand, within gsiCat 4431.485 kb on + strand, within gsiCat 4431.486 kb on - strand, within gsiCat 4431.488 kb on - strand, within gsiCat 4431.580 kb on + strand, within gsiCat 4431.609 kb on - strand, within gsiCat 4431.637 kb on - strand, within gsiCat 4431.701 kb on + strand, within gsiCat 4431.702 kb on - strand, within gsiCat 4431.702 kb on - strand, within gsiCat 4431.744 kb on - strand, within gsiCat 4431.765 kb on + strand, within gsiCat 4431.766 kb on - strand, within gsiCat 4431.783 kb on - strand, within gsiCat 4431.813 kb on - strand, within gsiCat 4431.893 kb on + strand, within gsiCat 4431.894 kb on - strand, within gsiCat 4431.894 kb on - strand, within gsiCat 4431.895 kb on + strand, within gsiCat 4431.895 kb on + strand, within gsiCat 4431.895 kb on + strand, within gsiCat 4431.895 kb on + strand, within gsiCat 4431.896 kb on - strand, within gsiCat 4431.896 kb on - strand, within gsiCat 4431.955 kb on - strand, within gsiCat 4431.955 kb on - strand, within gsiCat 4431.955 kb on - strand, within gsiCat 4431.955 kb on - strand, within gsiCat 4431.957 kb on - strand, within gsiCat 4432.047 kb on - strandat 4432.087 kb on + strandat 4432.087 kb on + strandat 4432.088 kb on - strandat 4432.088 kb on - strandat 4432.088 kb on - strandat 4432.088 kb on - strandat 4432.091 kb on + strandat 4432.091 kb on + strandat 4432.092 kb on - strandat 4432.092 kb on - strandat 4432.092 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RB51
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4,430,017 - +0.1
4,430,017 - +1.4
4,430,136 + +0.5
4,430,261 - -1.2
4,430,264 + -0.2
4,430,340 + -0.3
4,430,536 - gsiD NOLOHH_22445 0.30 -1.9
4,430,572 - gsiD NOLOHH_22445 0.34 -1.3
4,431,040 + gsiD NOLOHH_22445 0.85 -0.5
4,431,167 - +2.0
4,431,179 - -0.5
4,431,185 - -0.2
4,431,229 - +0.4
4,431,237 - -0.3
4,431,485 + gsiC NOLOHH_22450 0.33 -0.0
4,431,485 + gsiC NOLOHH_22450 0.33 -0.5
4,431,485 + gsiC NOLOHH_22450 0.33 +0.4
4,431,485 + gsiC NOLOHH_22450 0.33 -1.1
4,431,486 - gsiC NOLOHH_22450 0.34 +0.6
4,431,488 - gsiC NOLOHH_22450 0.34 -0.3
4,431,580 + gsiC NOLOHH_22450 0.44 -1.2
4,431,609 - gsiC NOLOHH_22450 0.47 +2.5
4,431,637 - gsiC NOLOHH_22450 0.50 +0.1
4,431,701 + gsiC NOLOHH_22450 0.57 -0.4
4,431,702 - gsiC NOLOHH_22450 0.57 -0.7
4,431,702 - gsiC NOLOHH_22450 0.57 +0.2
4,431,744 - gsiC NOLOHH_22450 0.62 +0.6
4,431,765 + gsiC NOLOHH_22450 0.64 +0.0
4,431,766 - gsiC NOLOHH_22450 0.64 +0.0
4,431,783 - gsiC NOLOHH_22450 0.66 -1.1
4,431,813 - gsiC NOLOHH_22450 0.69 +0.3
4,431,893 + gsiC NOLOHH_22450 0.78 -0.0
4,431,894 - gsiC NOLOHH_22450 0.78 +0.9
4,431,894 - gsiC NOLOHH_22450 0.78 +0.4
4,431,895 + gsiC NOLOHH_22450 0.78 +0.1
4,431,895 + gsiC NOLOHH_22450 0.78 +1.3
4,431,895 + gsiC NOLOHH_22450 0.78 -0.4
4,431,895 + gsiC NOLOHH_22450 0.78 -1.1
4,431,896 - gsiC NOLOHH_22450 0.78 -1.4
4,431,896 - gsiC NOLOHH_22450 0.78 +1.1
4,431,955 - gsiC NOLOHH_22450 0.84 -0.0
4,431,955 - gsiC NOLOHH_22450 0.84 +0.1
4,431,955 - gsiC NOLOHH_22450 0.84 -0.3
4,431,955 - gsiC NOLOHH_22450 0.84 +0.5
4,431,957 - gsiC NOLOHH_22450 0.85 -0.3
4,432,047 - +0.4
4,432,087 + +1.2
4,432,087 + -0.5
4,432,088 - +1.0
4,432,088 - +1.0
4,432,088 - -0.1
4,432,088 - +0.6
4,432,091 + +0.4
4,432,091 + -3.1
4,432,092 - +0.6
4,432,092 - -0.1
4,432,092 - -0.1

Or see this region's nucleotide sequence