Experiment: RB51
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pdeI and gsiD are separated by 177 nucleotides gsiD and gsiC are separated by 2 nucleotides gsiC and gsiB are separated by 17 nucleotides
NOLOHH_22440: pdeI - putative cyclic di-GMP phosphodiesterase PdeI, at 4,427,737 to 4,430,085
pdeI
NOLOHH_22445: gsiD - glutathione ABC transporter permease GsiD, at 4,430,263 to 4,431,174
gsiD
NOLOHH_22450: gsiC - glutathione ABC transporter permease GsiC, at 4,431,177 to 4,432,097
gsiC
NOLOHH_22455: gsiB - glutathione ABC transporter substrate-binding protein GsiB, at 4,432,115 to 4,433,653
gsiB
Position (kb)
4430
4431
4432 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4430.017 kb on - strand at 4430.017 kb on - strand at 4430.136 kb on + strand at 4430.261 kb on - strand at 4430.264 kb on + strand at 4430.340 kb on + strand at 4430.536 kb on - strand, within gsiD at 4430.572 kb on - strand, within gsiD at 4431.040 kb on + strand, within gsiD at 4431.167 kb on - strand at 4431.179 kb on - strand at 4431.185 kb on - strand at 4431.229 kb on - strand at 4431.237 kb on - strand at 4431.485 kb on + strand, within gsiC at 4431.485 kb on + strand, within gsiC at 4431.485 kb on + strand, within gsiC at 4431.485 kb on + strand, within gsiC at 4431.486 kb on - strand, within gsiC at 4431.488 kb on - strand, within gsiC at 4431.580 kb on + strand, within gsiC at 4431.609 kb on - strand, within gsiC at 4431.637 kb on - strand, within gsiC at 4431.701 kb on + strand, within gsiC at 4431.702 kb on - strand, within gsiC at 4431.702 kb on - strand, within gsiC at 4431.744 kb on - strand, within gsiC at 4431.765 kb on + strand, within gsiC at 4431.766 kb on - strand, within gsiC at 4431.783 kb on - strand, within gsiC at 4431.813 kb on - strand, within gsiC at 4431.893 kb on + strand, within gsiC at 4431.894 kb on - strand, within gsiC at 4431.894 kb on - strand, within gsiC at 4431.895 kb on + strand, within gsiC at 4431.895 kb on + strand, within gsiC at 4431.895 kb on + strand, within gsiC at 4431.895 kb on + strand, within gsiC at 4431.896 kb on - strand, within gsiC at 4431.896 kb on - strand, within gsiC at 4431.955 kb on - strand, within gsiC at 4431.955 kb on - strand, within gsiC at 4431.955 kb on - strand, within gsiC at 4431.955 kb on - strand, within gsiC at 4431.957 kb on - strand, within gsiC at 4432.047 kb on - strand at 4432.087 kb on + strand at 4432.087 kb on + strand at 4432.088 kb on - strand at 4432.088 kb on - strand at 4432.088 kb on - strand at 4432.088 kb on - strand at 4432.091 kb on + strand at 4432.091 kb on + strand at 4432.092 kb on - strand at 4432.092 kb on - strand at 4432.092 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RB51 remove 4,430,017 - +0.1 4,430,017 - +1.4 4,430,136 + +0.5 4,430,261 - -1.2 4,430,264 + -0.2 4,430,340 + -0.3 4,430,536 - gsiD NOLOHH_22445 0.30 -1.9 4,430,572 - gsiD NOLOHH_22445 0.34 -1.3 4,431,040 + gsiD NOLOHH_22445 0.85 -0.5 4,431,167 - +2.0 4,431,179 - -0.5 4,431,185 - -0.2 4,431,229 - +0.4 4,431,237 - -0.3 4,431,485 + gsiC NOLOHH_22450 0.33 -0.0 4,431,485 + gsiC NOLOHH_22450 0.33 -0.5 4,431,485 + gsiC NOLOHH_22450 0.33 +0.4 4,431,485 + gsiC NOLOHH_22450 0.33 -1.1 4,431,486 - gsiC NOLOHH_22450 0.34 +0.6 4,431,488 - gsiC NOLOHH_22450 0.34 -0.3 4,431,580 + gsiC NOLOHH_22450 0.44 -1.2 4,431,609 - gsiC NOLOHH_22450 0.47 +2.5 4,431,637 - gsiC NOLOHH_22450 0.50 +0.1 4,431,701 + gsiC NOLOHH_22450 0.57 -0.4 4,431,702 - gsiC NOLOHH_22450 0.57 -0.7 4,431,702 - gsiC NOLOHH_22450 0.57 +0.2 4,431,744 - gsiC NOLOHH_22450 0.62 +0.6 4,431,765 + gsiC NOLOHH_22450 0.64 +0.0 4,431,766 - gsiC NOLOHH_22450 0.64 +0.0 4,431,783 - gsiC NOLOHH_22450 0.66 -1.1 4,431,813 - gsiC NOLOHH_22450 0.69 +0.3 4,431,893 + gsiC NOLOHH_22450 0.78 -0.0 4,431,894 - gsiC NOLOHH_22450 0.78 +0.9 4,431,894 - gsiC NOLOHH_22450 0.78 +0.4 4,431,895 + gsiC NOLOHH_22450 0.78 +0.1 4,431,895 + gsiC NOLOHH_22450 0.78 +1.3 4,431,895 + gsiC NOLOHH_22450 0.78 -0.4 4,431,895 + gsiC NOLOHH_22450 0.78 -1.1 4,431,896 - gsiC NOLOHH_22450 0.78 -1.4 4,431,896 - gsiC NOLOHH_22450 0.78 +1.1 4,431,955 - gsiC NOLOHH_22450 0.84 -0.0 4,431,955 - gsiC NOLOHH_22450 0.84 +0.1 4,431,955 - gsiC NOLOHH_22450 0.84 -0.3 4,431,955 - gsiC NOLOHH_22450 0.84 +0.5 4,431,957 - gsiC NOLOHH_22450 0.85 -0.3 4,432,047 - +0.4 4,432,087 + +1.2 4,432,087 + -0.5 4,432,088 - +1.0 4,432,088 - +1.0 4,432,088 - -0.1 4,432,088 - +0.6 4,432,091 + +0.4 4,432,091 + -3.1 4,432,092 - +0.6 4,432,092 - -0.1 4,432,092 - -0.1
Or see this region's nucleotide sequence