Experiment: RB51
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_22270 and artP are separated by 217 nucleotides artP and artI are separated by 17 nucleotides artI and artQ are separated by 6 nucleotides artQ and artM overlap by 1 nucleotides
NOLOHH_22270: NOLOHH_22270 - lipoprotein, at 4,398,620 to 4,399,135
_22270
NOLOHH_22275: artP - arginine ABC transporter ATP-binding protein ArtP, at 4,399,353 to 4,400,081
artP
NOLOHH_22280: artI - Putative ABC transporter arginine-binding protein 2, at 4,400,099 to 4,400,830
artI
NOLOHH_22285: artQ - arginine ABC transporter permease ArtQ, at 4,400,837 to 4,401,553
artQ
NOLOHH_22290: artM - arginine ABC transporter permease ArtM, at 4,401,553 to 4,402,221
artM
Position (kb)
4400
4401 Strain fitness (log2 ratio)
-1
0
1
2
3 at 4399.233 kb on - strand at 4399.245 kb on + strand at 4399.280 kb on - strand at 4399.322 kb on + strand at 4399.323 kb on - strand at 4399.323 kb on - strand at 4399.326 kb on + strand at 4399.342 kb on + strand at 4399.359 kb on - strand at 4399.377 kb on - strand at 4399.450 kb on + strand, within artP at 4399.623 kb on + strand, within artP at 4399.837 kb on + strand, within artP at 4399.968 kb on - strand, within artP at 4399.989 kb on + strand, within artP at 4399.989 kb on + strand, within artP at 4399.989 kb on + strand, within artP at 4399.990 kb on - strand, within artP at 4400.124 kb on + strand at 4400.137 kb on + strand at 4400.284 kb on + strand, within artI at 4400.293 kb on + strand, within artI at 4400.411 kb on + strand, within artI at 4400.411 kb on + strand, within artI at 4400.450 kb on + strand, within artI at 4400.450 kb on + strand, within artI at 4400.450 kb on + strand, within artI at 4400.565 kb on - strand, within artI at 4400.696 kb on + strand, within artI at 4400.696 kb on + strand, within artI at 4400.795 kb on + strand at 4400.828 kb on + strand at 4400.828 kb on + strand at 4400.829 kb on - strand at 4401.035 kb on + strand, within artQ at 4401.179 kb on + strand, within artQ at 4401.397 kb on - strand, within artQ at 4401.703 kb on + strand, within artM at 4401.703 kb on + strand, within artM at 4401.703 kb on + strand, within artM at 4401.705 kb on + strand, within artM at 4401.705 kb on + strand, within artM at 4401.827 kb on + strand, within artM at 4401.827 kb on + strand, within artM
Per-strain Table
Position Strand Gene LocusTag Fraction RB51 remove 4,399,233 - -0.8 4,399,245 + +1.5 4,399,280 - -0.2 4,399,322 + -0.2 4,399,323 - -0.2 4,399,323 - +0.0 4,399,326 + +0.6 4,399,342 + -0.4 4,399,359 - -0.1 4,399,377 - +1.4 4,399,450 + artP NOLOHH_22275 0.13 +0.0 4,399,623 + artP NOLOHH_22275 0.37 +0.4 4,399,837 + artP NOLOHH_22275 0.66 -0.8 4,399,968 - artP NOLOHH_22275 0.84 +0.7 4,399,989 + artP NOLOHH_22275 0.87 +0.4 4,399,989 + artP NOLOHH_22275 0.87 +1.7 4,399,989 + artP NOLOHH_22275 0.87 +0.3 4,399,990 - artP NOLOHH_22275 0.87 +0.0 4,400,124 + -0.0 4,400,137 + +1.1 4,400,284 + artI NOLOHH_22280 0.25 -1.2 4,400,293 + artI NOLOHH_22280 0.27 +1.2 4,400,411 + artI NOLOHH_22280 0.43 +0.5 4,400,411 + artI NOLOHH_22280 0.43 -0.8 4,400,450 + artI NOLOHH_22280 0.48 +2.2 4,400,450 + artI NOLOHH_22280 0.48 +0.2 4,400,450 + artI NOLOHH_22280 0.48 -0.0 4,400,565 - artI NOLOHH_22280 0.64 -0.1 4,400,696 + artI NOLOHH_22280 0.82 -0.2 4,400,696 + artI NOLOHH_22280 0.82 -0.1 4,400,795 + -0.8 4,400,828 + -0.2 4,400,828 + -0.0 4,400,829 - -1.0 4,401,035 + artQ NOLOHH_22285 0.28 -0.6 4,401,179 + artQ NOLOHH_22285 0.48 -1.0 4,401,397 - artQ NOLOHH_22285 0.78 +0.0 4,401,703 + artM NOLOHH_22290 0.22 +0.1 4,401,703 + artM NOLOHH_22290 0.22 +0.4 4,401,703 + artM NOLOHH_22290 0.22 +0.4 4,401,705 + artM NOLOHH_22290 0.23 +3.0 4,401,705 + artM NOLOHH_22290 0.23 +0.4 4,401,827 + artM NOLOHH_22290 0.41 -0.7 4,401,827 + artM NOLOHH_22290 0.41 +1.3
Or see this region's nucleotide sequence