Strain Fitness in Escherichia coli ECOR27 around NOLOHH_21815

Experiment: RB51

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfabA and rmf are separated by 69 nucleotidesrmf and pqiC are separated by 255 nucleotidespqiC and pqiB overlap by 4 nucleotides NOLOHH_21805: fabA - bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase, at 4,286,228 to 4,286,854 fabA NOLOHH_21810: rmf - ribosome modulation factor, at 4,286,924 to 4,287,091 rmf NOLOHH_21815: pqiC - membrane integrity-associated transporter subunit PqiC, at 4,287,347 to 4,287,910 pqiC NOLOHH_21820: pqiB - intermembrane transport protein PqiB, at 4,287,907 to 4,289,547 pqiB Position (kb) 4287 4288Strain fitness (log2 ratio) -1 0 1at 4286.839 kb on + strandat 4287.227 kb on + strandat 4287.314 kb on - strandat 4287.327 kb on - strandat 4287.329 kb on - strandat 4287.349 kb on - strandat 4287.349 kb on - strandat 4287.411 kb on - strand, within pqiCat 4287.700 kb on - strand, within pqiCat 4287.835 kb on - strand, within pqiCat 4287.838 kb on - strand, within pqiCat 4287.959 kb on - strandat 4288.345 kb on - strand, within pqiBat 4288.375 kb on - strand, within pqiBat 4288.375 kb on - strand, within pqiBat 4288.546 kb on - strand, within pqiB

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Per-strain Table

Position Strand Gene LocusTag Fraction RB51
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4,286,839 + +0.5
4,287,227 + -1.7
4,287,314 - +0.7
4,287,327 - -0.4
4,287,329 - -0.5
4,287,349 - +1.2
4,287,349 - +0.2
4,287,411 - pqiC NOLOHH_21815 0.11 -1.5
4,287,700 - pqiC NOLOHH_21815 0.63 -0.0
4,287,835 - pqiC NOLOHH_21815 0.87 -0.4
4,287,838 - pqiC NOLOHH_21815 0.87 -0.7
4,287,959 - -1.0
4,288,345 - pqiB NOLOHH_21820 0.27 -0.8
4,288,375 - pqiB NOLOHH_21820 0.29 +0.9
4,288,375 - pqiB NOLOHH_21820 0.29 +0.6
4,288,546 - pqiB NOLOHH_21820 0.39 -0.1

Or see this region's nucleotide sequence