Strain Fitness in Escherichia coli ECOR27 around NOLOHH_20845

Experiment: RB51

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntNOLOHH_20835 and ymgF are separated by 399 nucleotidesymgF and pdeG are separated by 131 nucleotidespdeG and ymgC are separated by 331 nucleotidesymgC and ariR are separated by 112 nucleotides NOLOHH_20835: NOLOHH_20835 - hypothetical protein, at 4,098,644 to 4,099,567 _20835 NOLOHH_20840: ymgF - Inner membrane protein YmgF, at 4,099,967 to 4,100,185 ymgF NOLOHH_20845: pdeG - putative cyclic di-GMP phosphodiesterase PdeG, at 4,100,317 to 4,101,840 pdeG NOLOHH_20850: ymgC - Uncharacterized protein YmgC, at 4,102,172 to 4,102,420 ymgC NOLOHH_20855: ariR - biofilm/acid-resistance regulator AriR, at 4,102,533 to 4,102,799 ariR Position (kb) 4100 4101 4102Strain fitness (log2 ratio) -1 0 1at 4101.120 kb on + strand, within pdeGat 4102.174 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RB51
remove
4,101,120 + pdeG NOLOHH_20845 0.53 -1.3
4,102,174 - +0.5

Or see this region's nucleotide sequence