Experiment: RB51
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gp18 and NOLOHH_19625 overlap by 1 nucleotides NOLOHH_19625 and NOLOHH_19630 are separated by 34 nucleotides NOLOHH_19630 and NOLOHH_19635 are separated by 473 nucleotides NOLOHH_19635 and NOLOHH_19640 are separated by 60 nucleotides
NOLOHH_19620: gp18 - phage minor tail protein L, at 3,875,159 to 3,875,857
gp18
NOLOHH_19625: NOLOHH_19625 - phage tail protein, at 3,875,857 to 3,876,153
_19625
NOLOHH_19630: NOLOHH_19630 - phage tail tape measure protein, at 3,876,188 to 3,879,421
_19630
NOLOHH_19635: NOLOHH_19635 - hypothetical protein, at 3,879,895 to 3,880,344
_19635
NOLOHH_19640: NOLOHH_19640 - Phage tail tube protein, at 3,880,405 to 3,881,367
_19640
Position (kb)
3876
3877
3878
3879
3880 Strain fitness (log2 ratio)
-2
-1
0
1 at 3875.540 kb on - strand, within gp18 at 3875.847 kb on - strand at 3875.847 kb on - strand at 3875.847 kb on - strand at 3875.898 kb on - strand, within NOLOHH_19625 at 3875.898 kb on - strand, within NOLOHH_19625 at 3876.076 kb on - strand, within NOLOHH_19625 at 3876.198 kb on - strand at 3876.330 kb on - strand at 3876.340 kb on - strand at 3876.344 kb on - strand at 3876.371 kb on - strand at 3876.377 kb on - strand at 3876.380 kb on - strand at 3876.500 kb on - strand at 3876.500 kb on - strand at 3876.638 kb on - strand, within NOLOHH_19630 at 3876.815 kb on - strand, within NOLOHH_19630 at 3876.839 kb on - strand, within NOLOHH_19630 at 3878.753 kb on - strand, within NOLOHH_19630 at 3878.915 kb on + strand, within NOLOHH_19630 at 3878.941 kb on + strand, within NOLOHH_19630 at 3879.477 kb on - strand at 3879.678 kb on - strand at 3880.086 kb on - strand, within NOLOHH_19635 at 3880.280 kb on - strand, within NOLOHH_19635 at 3880.374 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RB51 remove 3,875,540 - gp18 NOLOHH_19620 0.55 +0.7 3,875,847 - -1.5 3,875,847 - +0.1 3,875,847 - +0.6 3,875,898 - NOLOHH_19625 0.14 +1.1 3,875,898 - NOLOHH_19625 0.14 +1.3 3,876,076 - NOLOHH_19625 0.74 +0.8 3,876,198 - +0.0 3,876,330 - +1.2 3,876,340 - -0.4 3,876,344 - +0.3 3,876,371 - -0.6 3,876,377 - +0.1 3,876,380 - -0.8 3,876,500 - +1.7 3,876,500 - +1.4 3,876,638 - NOLOHH_19630 0.14 -0.2 3,876,815 - NOLOHH_19630 0.19 -0.6 3,876,839 - NOLOHH_19630 0.20 -1.5 3,878,753 - NOLOHH_19630 0.79 -2.1 3,878,915 + NOLOHH_19630 0.84 +0.4 3,878,941 + NOLOHH_19630 0.85 -0.3 3,879,477 - -0.4 3,879,678 - +1.2 3,880,086 - NOLOHH_19635 0.42 +0.4 3,880,280 - NOLOHH_19635 0.86 -0.5 3,880,374 - -0.2
Or see this region's nucleotide sequence