Strain Fitness in Escherichia coli ECOR27 around NOLOHH_19630

Experiment: RB51

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgp18 and NOLOHH_19625 overlap by 1 nucleotidesNOLOHH_19625 and NOLOHH_19630 are separated by 34 nucleotidesNOLOHH_19630 and NOLOHH_19635 are separated by 473 nucleotidesNOLOHH_19635 and NOLOHH_19640 are separated by 60 nucleotides NOLOHH_19620: gp18 - phage minor tail protein L, at 3,875,159 to 3,875,857 gp18 NOLOHH_19625: NOLOHH_19625 - phage tail protein, at 3,875,857 to 3,876,153 _19625 NOLOHH_19630: NOLOHH_19630 - phage tail tape measure protein, at 3,876,188 to 3,879,421 _19630 NOLOHH_19635: NOLOHH_19635 - hypothetical protein, at 3,879,895 to 3,880,344 _19635 NOLOHH_19640: NOLOHH_19640 - Phage tail tube protein, at 3,880,405 to 3,881,367 _19640 Position (kb) 3876 3877 3878 3879 3880Strain fitness (log2 ratio) -2 -1 0 1at 3875.540 kb on - strand, within gp18at 3875.847 kb on - strandat 3875.847 kb on - strandat 3875.847 kb on - strandat 3875.898 kb on - strand, within NOLOHH_19625at 3875.898 kb on - strand, within NOLOHH_19625at 3876.076 kb on - strand, within NOLOHH_19625at 3876.198 kb on - strandat 3876.330 kb on - strandat 3876.340 kb on - strandat 3876.344 kb on - strandat 3876.371 kb on - strandat 3876.377 kb on - strandat 3876.380 kb on - strandat 3876.500 kb on - strandat 3876.500 kb on - strandat 3876.638 kb on - strand, within NOLOHH_19630at 3876.815 kb on - strand, within NOLOHH_19630at 3876.839 kb on - strand, within NOLOHH_19630at 3878.753 kb on - strand, within NOLOHH_19630at 3878.915 kb on + strand, within NOLOHH_19630at 3878.941 kb on + strand, within NOLOHH_19630at 3879.477 kb on - strandat 3879.678 kb on - strandat 3880.086 kb on - strand, within NOLOHH_19635at 3880.280 kb on - strand, within NOLOHH_19635at 3880.374 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RB51
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3,875,540 - gp18 NOLOHH_19620 0.55 +0.7
3,875,847 - -1.5
3,875,847 - +0.1
3,875,847 - +0.6
3,875,898 - NOLOHH_19625 0.14 +1.1
3,875,898 - NOLOHH_19625 0.14 +1.3
3,876,076 - NOLOHH_19625 0.74 +0.8
3,876,198 - +0.0
3,876,330 - +1.2
3,876,340 - -0.4
3,876,344 - +0.3
3,876,371 - -0.6
3,876,377 - +0.1
3,876,380 - -0.8
3,876,500 - +1.7
3,876,500 - +1.4
3,876,638 - NOLOHH_19630 0.14 -0.2
3,876,815 - NOLOHH_19630 0.19 -0.6
3,876,839 - NOLOHH_19630 0.20 -1.5
3,878,753 - NOLOHH_19630 0.79 -2.1
3,878,915 + NOLOHH_19630 0.84 +0.4
3,878,941 + NOLOHH_19630 0.85 -0.3
3,879,477 - -0.4
3,879,678 - +1.2
3,880,086 - NOLOHH_19635 0.42 +0.4
3,880,280 - NOLOHH_19635 0.86 -0.5
3,880,374 - -0.2

Or see this region's nucleotide sequence