Strain Fitness in Escherichia coli ECOR27 around NOLOHH_19240

Experiment: RB51

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpatD and ydcV are separated by 21 nucleotidesydcV and potB overlap by 11 nucleotidespotB and NOLOHH_19245 are separated by 0 nucleotides NOLOHH_19230: patD - aminobutyraldehyde dehydrogenase, at 3,789,044 to 3,790,468 patD NOLOHH_19235: ydcV - Inner membrane ABC transporter permease protein YdcV, at 3,790,490 to 3,791,284 ydcV NOLOHH_19240: potB - spermidine/putrescine ABC transporter permease, at 3,791,274 to 3,792,215 potB NOLOHH_19245: NOLOHH_19245 - polyamine ABC transporter ATP-binding protein, at 3,792,216 to 3,793,229 _19245 Position (kb) 3791 3792 3793Strain fitness (log2 ratio) -1 0 1at 3790.559 kb on - strandat 3790.559 kb on - strandat 3790.580 kb on - strand, within ydcVat 3790.590 kb on - strand, within ydcVat 3790.742 kb on + strand, within ydcVat 3790.742 kb on + strand, within ydcVat 3790.743 kb on - strand, within ydcVat 3790.743 kb on - strand, within ydcVat 3790.743 kb on - strand, within ydcVat 3790.747 kb on - strand, within ydcVat 3791.055 kb on - strand, within ydcVat 3791.317 kb on + strandat 3791.639 kb on - strand, within potBat 3791.706 kb on - strand, within potBat 3791.795 kb on - strand, within potBat 3791.841 kb on - strand, within potBat 3792.563 kb on - strand, within NOLOHH_19245at 3792.993 kb on - strand, within NOLOHH_19245at 3793.128 kb on - strandat 3793.128 kb on - strandat 3793.128 kb on - strandat 3793.190 kb on - strandat 3793.190 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RB51
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3,790,559 - -0.0
3,790,559 - +0.4
3,790,580 - ydcV NOLOHH_19235 0.11 +0.6
3,790,590 - ydcV NOLOHH_19235 0.13 +0.7
3,790,742 + ydcV NOLOHH_19235 0.32 +0.4
3,790,742 + ydcV NOLOHH_19235 0.32 +0.2
3,790,743 - ydcV NOLOHH_19235 0.32 -0.8
3,790,743 - ydcV NOLOHH_19235 0.32 -0.4
3,790,743 - ydcV NOLOHH_19235 0.32 -1.1
3,790,747 - ydcV NOLOHH_19235 0.32 +0.1
3,791,055 - ydcV NOLOHH_19235 0.71 -0.9
3,791,317 + +0.3
3,791,639 - potB NOLOHH_19240 0.39 -0.4
3,791,706 - potB NOLOHH_19240 0.46 -0.4
3,791,795 - potB NOLOHH_19240 0.55 -0.9
3,791,841 - potB NOLOHH_19240 0.60 +0.2
3,792,563 - NOLOHH_19245 0.34 +1.3
3,792,993 - NOLOHH_19245 0.77 +0.1
3,793,128 - +1.2
3,793,128 - +1.6
3,793,128 - -1.6
3,793,190 - +0.2
3,793,190 - +0.6

Or see this region's nucleotide sequence