Strain Fitness in Escherichia coli ECOR27 around NOLOHH_17690

Experiment: RB51

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydiR and ydiQ are separated by 19 nucleotidesydiQ and NOLOHH_17695 are separated by 36 nucleotidesNOLOHH_17695 and ydiP are separated by 102 nucleotides NOLOHH_17685: ydiR - electron transfer flavoprotein subunit alpha, at 3,471,877 to 3,472,815 ydiR NOLOHH_17690: ydiQ - electron transfer flavoprotein, at 3,472,835 to 3,473,599 ydiQ NOLOHH_17695: NOLOHH_17695 - hypothetical protein, at 3,473,636 to 3,473,812 _17695 NOLOHH_17700: ydiP - Uncharacterized HTH-type transcriptional regulator YdiP, at 3,473,915 to 3,474,826 ydiP Position (kb) 3472 3473 3474Strain fitness (log2 ratio) -2 -1 0 1at 3471.917 kb on + strandat 3471.917 kb on + strandat 3471.918 kb on - strandat 3471.918 kb on - strandat 3471.948 kb on - strandat 3472.017 kb on + strand, within ydiRat 3472.310 kb on + strand, within ydiRat 3472.310 kb on + strand, within ydiRat 3472.311 kb on - strand, within ydiRat 3472.311 kb on - strand, within ydiRat 3472.311 kb on - strand, within ydiRat 3472.543 kb on - strand, within ydiRat 3472.573 kb on - strand, within ydiRat 3472.663 kb on - strand, within ydiRat 3472.721 kb on + strand, within ydiRat 3473.146 kb on + strand, within ydiQat 3473.356 kb on - strand, within ydiQat 3473.591 kb on + strandat 3473.592 kb on - strandat 3473.662 kb on - strand, within NOLOHH_17695at 3473.771 kb on - strand, within NOLOHH_17695at 3473.843 kb on - strandat 3473.854 kb on - strandat 3473.878 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RB51
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3,471,917 + -0.3
3,471,917 + -0.2
3,471,918 - -1.1
3,471,918 - -0.6
3,471,948 - -1.5
3,472,017 + ydiR NOLOHH_17685 0.15 -0.7
3,472,310 + ydiR NOLOHH_17685 0.46 +0.8
3,472,310 + ydiR NOLOHH_17685 0.46 -0.8
3,472,311 - ydiR NOLOHH_17685 0.46 +1.1
3,472,311 - ydiR NOLOHH_17685 0.46 -2.4
3,472,311 - ydiR NOLOHH_17685 0.46 +0.8
3,472,543 - ydiR NOLOHH_17685 0.71 +1.5
3,472,573 - ydiR NOLOHH_17685 0.74 -0.5
3,472,663 - ydiR NOLOHH_17685 0.84 +0.6
3,472,721 + ydiR NOLOHH_17685 0.90 -0.4
3,473,146 + ydiQ NOLOHH_17690 0.41 +0.4
3,473,356 - ydiQ NOLOHH_17690 0.68 -1.2
3,473,591 + +0.3
3,473,592 - +0.7
3,473,662 - NOLOHH_17695 0.15 -0.1
3,473,771 - NOLOHH_17695 0.76 +1.1
3,473,843 - -0.8
3,473,854 - -1.3
3,473,878 + +0.9

Or see this region's nucleotide sequence