Experiment: RB51
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydiR and ydiQ are separated by 19 nucleotides ydiQ and NOLOHH_17695 are separated by 36 nucleotides NOLOHH_17695 and ydiP are separated by 102 nucleotides
NOLOHH_17685: ydiR - electron transfer flavoprotein subunit alpha, at 3,471,877 to 3,472,815
ydiR
NOLOHH_17690: ydiQ - electron transfer flavoprotein, at 3,472,835 to 3,473,599
ydiQ
NOLOHH_17695: NOLOHH_17695 - hypothetical protein, at 3,473,636 to 3,473,812
_17695
NOLOHH_17700: ydiP - Uncharacterized HTH-type transcriptional regulator YdiP, at 3,473,915 to 3,474,826
ydiP
Position (kb)
3472
3473
3474 Strain fitness (log2 ratio)
-2
-1
0
1 at 3471.917 kb on + strand at 3471.917 kb on + strand at 3471.918 kb on - strand at 3471.918 kb on - strand at 3471.948 kb on - strand at 3472.017 kb on + strand, within ydiR at 3472.310 kb on + strand, within ydiR at 3472.310 kb on + strand, within ydiR at 3472.311 kb on - strand, within ydiR at 3472.311 kb on - strand, within ydiR at 3472.311 kb on - strand, within ydiR at 3472.543 kb on - strand, within ydiR at 3472.573 kb on - strand, within ydiR at 3472.663 kb on - strand, within ydiR at 3472.721 kb on + strand, within ydiR at 3473.146 kb on + strand, within ydiQ at 3473.356 kb on - strand, within ydiQ at 3473.591 kb on + strand at 3473.592 kb on - strand at 3473.662 kb on - strand, within NOLOHH_17695 at 3473.771 kb on - strand, within NOLOHH_17695 at 3473.843 kb on - strand at 3473.854 kb on - strand at 3473.878 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RB51 remove 3,471,917 + -0.3 3,471,917 + -0.2 3,471,918 - -1.1 3,471,918 - -0.6 3,471,948 - -1.5 3,472,017 + ydiR NOLOHH_17685 0.15 -0.7 3,472,310 + ydiR NOLOHH_17685 0.46 +0.8 3,472,310 + ydiR NOLOHH_17685 0.46 -0.8 3,472,311 - ydiR NOLOHH_17685 0.46 +1.1 3,472,311 - ydiR NOLOHH_17685 0.46 -2.4 3,472,311 - ydiR NOLOHH_17685 0.46 +0.8 3,472,543 - ydiR NOLOHH_17685 0.71 +1.5 3,472,573 - ydiR NOLOHH_17685 0.74 -0.5 3,472,663 - ydiR NOLOHH_17685 0.84 +0.6 3,472,721 + ydiR NOLOHH_17685 0.90 -0.4 3,473,146 + ydiQ NOLOHH_17690 0.41 +0.4 3,473,356 - ydiQ NOLOHH_17690 0.68 -1.2 3,473,591 + +0.3 3,473,592 - +0.7 3,473,662 - NOLOHH_17695 0.15 -0.1 3,473,771 - NOLOHH_17695 0.76 +1.1 3,473,843 - -0.8 3,473,854 - -1.3 3,473,878 + +0.9
Or see this region's nucleotide sequence