Strain Fitness in Escherichia coli ECOR27 around NOLOHH_17010

Experiment: RB51

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 nttnp-IS3 and tnp-IS3 overlap by 4 nucleotidestnp-IS3 and NOLOHH_17005 are separated by 74 nucleotidesNOLOHH_17005 and yobH are separated by 142 nucleotidesyobH and yebO are separated by 376 nucleotides NOLOHH_16995: tnp-IS3 - IS3 family transposase, at 3,339,180 to 3,340,046 tnp-IS3 NOLOHH_17000: tnp-IS3 - IS3 family IS3 transposase, at 3,340,043 to 3,340,342 tnp-IS3 NOLOHH_17005: NOLOHH_17005 - IclR-family transcriptional regulator, at 3,340,417 to 3,340,641 _17005 NOLOHH_17010: yobH - Uncharacterized protein YobH, at 3,340,784 to 3,341,023 yobH NOLOHH_17015: yebO - Uncharacterized protein YebO, at 3,341,400 to 3,341,687 yebO Position (kb) 3340 3341 3342Strain fitness (log2 ratio) -2 -1 0 1 2at 3340.571 kb on - strand, within NOLOHH_17005at 3340.685 kb on - strandat 3340.685 kb on - strandat 3340.786 kb on - strandat 3340.814 kb on - strand, within yobHat 3340.867 kb on - strand, within yobHat 3340.867 kb on - strand, within yobHat 3340.900 kb on - strand, within yobHat 3340.904 kb on - strand, within yobHat 3340.983 kb on - strand, within yobHat 3341.000 kb on - strandat 3341.000 kb on - strandat 3341.000 kb on - strandat 3341.000 kb on - strandat 3341.000 kb on - strandat 3341.025 kb on - strandat 3341.085 kb on - strandat 3341.107 kb on + strandat 3341.115 kb on + strandat 3341.116 kb on - strandat 3341.116 kb on - strandat 3341.116 kb on - strandat 3341.145 kb on - strandat 3341.157 kb on + strandat 3341.157 kb on + strandat 3341.157 kb on + strandat 3341.157 kb on + strandat 3341.157 kb on + strandat 3341.157 kb on + strandat 3341.162 kb on + strandat 3341.162 kb on + strandat 3341.449 kb on + strand, within yebOat 3341.578 kb on + strand, within yebOat 3341.660 kb on + strandat 3341.660 kb on + strandat 3341.663 kb on + strandat 3341.747 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RB51
remove
3,340,571 - NOLOHH_17005 0.68 -0.4
3,340,685 - -2.1
3,340,685 - +1.4
3,340,786 - -0.6
3,340,814 - yobH NOLOHH_17010 0.12 -0.8
3,340,867 - yobH NOLOHH_17010 0.35 -0.9
3,340,867 - yobH NOLOHH_17010 0.35 -1.2
3,340,900 - yobH NOLOHH_17010 0.48 +0.0
3,340,904 - yobH NOLOHH_17010 0.50 -0.8
3,340,983 - yobH NOLOHH_17010 0.83 +2.4
3,341,000 - +0.3
3,341,000 - +0.4
3,341,000 - -0.3
3,341,000 - -1.0
3,341,000 - +1.7
3,341,025 - -0.8
3,341,085 - -0.0
3,341,107 + -0.3
3,341,115 + +0.4
3,341,116 - +0.4
3,341,116 - -1.1
3,341,116 - +0.6
3,341,145 - -1.2
3,341,157 + -0.9
3,341,157 + +0.4
3,341,157 + -0.0
3,341,157 + -0.1
3,341,157 + -0.0
3,341,157 + -1.0
3,341,162 + +0.2
3,341,162 + -0.2
3,341,449 + yebO NOLOHH_17015 0.17 -0.5
3,341,578 + yebO NOLOHH_17015 0.62 -0.9
3,341,660 + -0.4
3,341,660 + -0.5
3,341,663 + +0.0
3,341,747 - -1.7

Or see this region's nucleotide sequence