Experiment: RB51
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tnp-IS3 and tnp-IS3 overlap by 4 nucleotides tnp-IS3 and NOLOHH_17005 are separated by 74 nucleotides NOLOHH_17005 and yobH are separated by 142 nucleotides yobH and yebO are separated by 376 nucleotides
NOLOHH_16995: tnp-IS3 - IS3 family transposase, at 3,339,180 to 3,340,046
tnp-IS3
NOLOHH_17000: tnp-IS3 - IS3 family IS3 transposase, at 3,340,043 to 3,340,342
tnp-IS3
NOLOHH_17005: NOLOHH_17005 - IclR-family transcriptional regulator, at 3,340,417 to 3,340,641
_17005
NOLOHH_17010: yobH - Uncharacterized protein YobH, at 3,340,784 to 3,341,023
yobH
NOLOHH_17015: yebO - Uncharacterized protein YebO, at 3,341,400 to 3,341,687
yebO
Position (kb)
3340
3341
3342 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3340.571 kb on - strand, within NOLOHH_17005 at 3340.685 kb on - strand at 3340.685 kb on - strand at 3340.786 kb on - strand at 3340.814 kb on - strand, within yobH at 3340.867 kb on - strand, within yobH at 3340.867 kb on - strand, within yobH at 3340.900 kb on - strand, within yobH at 3340.904 kb on - strand, within yobH at 3340.983 kb on - strand, within yobH at 3341.000 kb on - strand at 3341.000 kb on - strand at 3341.000 kb on - strand at 3341.000 kb on - strand at 3341.000 kb on - strand at 3341.025 kb on - strand at 3341.085 kb on - strand at 3341.107 kb on + strand at 3341.115 kb on + strand at 3341.116 kb on - strand at 3341.116 kb on - strand at 3341.116 kb on - strand at 3341.145 kb on - strand at 3341.157 kb on + strand at 3341.157 kb on + strand at 3341.157 kb on + strand at 3341.157 kb on + strand at 3341.157 kb on + strand at 3341.157 kb on + strand at 3341.162 kb on + strand at 3341.162 kb on + strand at 3341.449 kb on + strand, within yebO at 3341.578 kb on + strand, within yebO at 3341.660 kb on + strand at 3341.660 kb on + strand at 3341.663 kb on + strand at 3341.747 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RB51 remove 3,340,571 - NOLOHH_17005 0.68 -0.4 3,340,685 - -2.1 3,340,685 - +1.4 3,340,786 - -0.6 3,340,814 - yobH NOLOHH_17010 0.12 -0.8 3,340,867 - yobH NOLOHH_17010 0.35 -0.9 3,340,867 - yobH NOLOHH_17010 0.35 -1.2 3,340,900 - yobH NOLOHH_17010 0.48 +0.0 3,340,904 - yobH NOLOHH_17010 0.50 -0.8 3,340,983 - yobH NOLOHH_17010 0.83 +2.4 3,341,000 - +0.3 3,341,000 - +0.4 3,341,000 - -0.3 3,341,000 - -1.0 3,341,000 - +1.7 3,341,025 - -0.8 3,341,085 - -0.0 3,341,107 + -0.3 3,341,115 + +0.4 3,341,116 - +0.4 3,341,116 - -1.1 3,341,116 - +0.6 3,341,145 - -1.2 3,341,157 + -0.9 3,341,157 + +0.4 3,341,157 + -0.0 3,341,157 + -0.1 3,341,157 + -0.0 3,341,157 + -1.0 3,341,162 + +0.2 3,341,162 + -0.2 3,341,449 + yebO NOLOHH_17015 0.17 -0.5 3,341,578 + yebO NOLOHH_17015 0.62 -0.9 3,341,660 + -0.4 3,341,660 + -0.5 3,341,663 + +0.0 3,341,747 - -1.7
Or see this region's nucleotide sequence