Strain Fitness in Escherichia coli ECOR27 around NOLOHH_15000

Experiment: RB51

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyeiQ and yeiP are separated by 222 nucleotidesyeiP and yeiW are separated by 154 nucleotidesyeiW and setB overlap by 4 nucleotides NOLOHH_14990: yeiQ - Uncharacterized oxidoreductase YeiQ, at 2,936,505 to 2,937,971 yeiQ NOLOHH_14995: yeiP - elongation factor P-like protein YeiP, at 2,938,194 to 2,938,766 yeiP NOLOHH_15000: yeiW - UPF0153 protein YeiW, at 2,938,921 to 2,939,175 yeiW NOLOHH_15005: setB - sugar efflux transporter SetB, at 2,939,172 to 2,940,353 setB Position (kb) 2938 2939 2940Strain fitness (log2 ratio) -2 -1 0 1 2at 2937.933 kb on + strandat 2937.933 kb on + strandat 2937.934 kb on - strandat 2938.212 kb on - strandat 2938.212 kb on - strandat 2938.214 kb on - strandat 2938.214 kb on - strandat 2938.258 kb on - strand, within yeiPat 2938.261 kb on + strand, within yeiPat 2938.261 kb on + strand, within yeiPat 2938.488 kb on - strand, within yeiPat 2938.497 kb on - strand, within yeiPat 2938.498 kb on + strand, within yeiPat 2938.499 kb on - strand, within yeiPat 2938.499 kb on - strand, within yeiPat 2938.522 kb on + strand, within yeiPat 2938.522 kb on + strand, within yeiPat 2938.523 kb on - strand, within yeiPat 2938.523 kb on - strand, within yeiPat 2938.523 kb on - strand, within yeiPat 2938.541 kb on - strand, within yeiPat 2938.541 kb on - strand, within yeiPat 2938.907 kb on + strandat 2938.908 kb on - strandat 2938.920 kb on + strandat 2938.920 kb on + strandat 2938.920 kb on + strandat 2938.921 kb on - strandat 2939.090 kb on + strand, within yeiWat 2939.091 kb on - strand, within yeiWat 2939.116 kb on - strand, within yeiWat 2939.183 kb on + strandat 2939.193 kb on + strandat 2939.194 kb on - strandat 2939.318 kb on + strand, within setBat 2939.321 kb on - strand, within setBat 2939.369 kb on - strand, within setBat 2939.503 kb on - strand, within setBat 2939.534 kb on - strand, within setBat 2939.627 kb on + strand, within setBat 2939.627 kb on + strand, within setBat 2939.627 kb on + strand, within setBat 2939.628 kb on - strand, within setBat 2939.628 kb on - strand, within setBat 2939.628 kb on - strand, within setBat 2939.631 kb on + strand, within setBat 2939.650 kb on + strand, within setBat 2939.650 kb on + strand, within setBat 2939.651 kb on - strand, within setBat 2939.702 kb on + strand, within setBat 2939.827 kb on + strand, within setBat 2939.827 kb on + strand, within setBat 2939.828 kb on - strand, within setBat 2939.864 kb on - strand, within setBat 2939.864 kb on - strand, within setBat 2940.006 kb on - strand, within setBat 2940.009 kb on - strand, within setBat 2940.040 kb on + strand, within setBat 2940.040 kb on + strand, within setBat 2940.041 kb on - strand, within setBat 2940.041 kb on - strand, within setBat 2940.125 kb on + strand, within setB

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Per-strain Table

Position Strand Gene LocusTag Fraction RB51
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2,937,933 + +0.3
2,937,933 + -0.6
2,937,934 - +1.3
2,938,212 - +0.1
2,938,212 - -0.0
2,938,214 - +0.7
2,938,214 - +0.5
2,938,258 - yeiP NOLOHH_14995 0.11 -0.0
2,938,261 + yeiP NOLOHH_14995 0.12 +1.2
2,938,261 + yeiP NOLOHH_14995 0.12 +0.5
2,938,488 - yeiP NOLOHH_14995 0.51 +0.2
2,938,497 - yeiP NOLOHH_14995 0.53 +0.6
2,938,498 + yeiP NOLOHH_14995 0.53 -0.5
2,938,499 - yeiP NOLOHH_14995 0.53 +0.7
2,938,499 - yeiP NOLOHH_14995 0.53 +0.8
2,938,522 + yeiP NOLOHH_14995 0.57 +0.4
2,938,522 + yeiP NOLOHH_14995 0.57 -0.1
2,938,523 - yeiP NOLOHH_14995 0.57 -1.1
2,938,523 - yeiP NOLOHH_14995 0.57 -0.8
2,938,523 - yeiP NOLOHH_14995 0.57 +0.7
2,938,541 - yeiP NOLOHH_14995 0.61 +0.2
2,938,541 - yeiP NOLOHH_14995 0.61 -0.7
2,938,907 + -0.8
2,938,908 - +0.9
2,938,920 + -1.2
2,938,920 + -0.9
2,938,920 + -0.7
2,938,921 - -1.7
2,939,090 + yeiW NOLOHH_15000 0.66 +0.2
2,939,091 - yeiW NOLOHH_15000 0.67 -1.2
2,939,116 - yeiW NOLOHH_15000 0.76 -1.2
2,939,183 + +0.2
2,939,193 + -0.6
2,939,194 - +1.1
2,939,318 + setB NOLOHH_15005 0.12 +1.7
2,939,321 - setB NOLOHH_15005 0.13 -1.3
2,939,369 - setB NOLOHH_15005 0.17 +0.1
2,939,503 - setB NOLOHH_15005 0.28 +0.2
2,939,534 - setB NOLOHH_15005 0.31 +1.1
2,939,627 + setB NOLOHH_15005 0.38 +0.3
2,939,627 + setB NOLOHH_15005 0.38 +0.6
2,939,627 + setB NOLOHH_15005 0.38 +0.5
2,939,628 - setB NOLOHH_15005 0.39 -0.5
2,939,628 - setB NOLOHH_15005 0.39 -0.5
2,939,628 - setB NOLOHH_15005 0.39 -0.0
2,939,631 + setB NOLOHH_15005 0.39 +1.5
2,939,650 + setB NOLOHH_15005 0.40 -0.4
2,939,650 + setB NOLOHH_15005 0.40 +0.1
2,939,651 - setB NOLOHH_15005 0.41 +1.9
2,939,702 + setB NOLOHH_15005 0.45 -0.6
2,939,827 + setB NOLOHH_15005 0.55 +0.1
2,939,827 + setB NOLOHH_15005 0.55 +0.1
2,939,828 - setB NOLOHH_15005 0.55 -0.6
2,939,864 - setB NOLOHH_15005 0.59 -1.8
2,939,864 - setB NOLOHH_15005 0.59 +0.3
2,940,006 - setB NOLOHH_15005 0.71 +0.7
2,940,009 - setB NOLOHH_15005 0.71 +1.2
2,940,040 + setB NOLOHH_15005 0.73 +0.4
2,940,040 + setB NOLOHH_15005 0.73 +1.0
2,940,041 - setB NOLOHH_15005 0.74 +0.5
2,940,041 - setB NOLOHH_15005 0.74 -0.5
2,940,125 + setB NOLOHH_15005 0.81 -0.4

Or see this region's nucleotide sequence