Experiment: RB51
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ccmF and dsbE overlap by 4 nucleotides dsbE and ccmH overlap by 4 nucleotides
NOLOHH_14880: ccmF - cytochrome c-type biogenesis heme lyase CcmF, at 2,910,686 to 2,912,629
ccmF
NOLOHH_14885: dsbE - thiol:disulfide interchange protein DsbE, at 2,912,626 to 2,913,183
dsbE
NOLOHH_14890: ccmH - cytochrome c-type biogenesis thiol:disulfide oxidoreductase CcmH, at 2,913,180 to 2,914,232
ccmH
Position (kb)
2912
2913
2914 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2911.627 kb on + strand, within ccmF at 2911.639 kb on + strand, within ccmF at 2911.782 kb on + strand, within ccmF at 2911.785 kb on + strand, within ccmF at 2911.785 kb on + strand, within ccmF at 2911.834 kb on + strand, within ccmF at 2912.204 kb on + strand, within ccmF at 2912.204 kb on + strand, within ccmF at 2912.384 kb on + strand, within ccmF at 2912.384 kb on + strand, within ccmF at 2912.384 kb on + strand, within ccmF at 2912.384 kb on + strand, within ccmF at 2912.447 kb on + strand at 2912.501 kb on + strand at 2912.639 kb on + strand at 2912.938 kb on + strand, within dsbE at 2912.938 kb on + strand, within dsbE at 2912.940 kb on + strand, within dsbE at 2913.026 kb on + strand, within dsbE at 2913.160 kb on + strand at 2913.160 kb on + strand at 2913.160 kb on + strand at 2913.161 kb on - strand at 2913.378 kb on + strand, within ccmH at 2913.423 kb on + strand, within ccmH at 2913.423 kb on + strand, within ccmH at 2913.425 kb on + strand, within ccmH at 2913.425 kb on + strand, within ccmH at 2913.426 kb on - strand, within ccmH at 2913.457 kb on - strand, within ccmH at 2913.457 kb on - strand, within ccmH at 2913.605 kb on + strand, within ccmH at 2913.605 kb on + strand, within ccmH at 2913.672 kb on + strand, within ccmH at 2913.672 kb on + strand, within ccmH at 2913.673 kb on - strand, within ccmH at 2913.844 kb on + strand, within ccmH at 2913.844 kb on + strand, within ccmH at 2913.844 kb on + strand, within ccmH at 2913.844 kb on + strand, within ccmH at 2913.844 kb on + strand, within ccmH at 2913.845 kb on - strand, within ccmH at 2913.845 kb on - strand, within ccmH at 2913.857 kb on + strand, within ccmH at 2913.857 kb on + strand, within ccmH at 2913.857 kb on + strand, within ccmH at 2913.964 kb on - strand, within ccmH at 2914.049 kb on + strand, within ccmH at 2914.066 kb on + strand, within ccmH at 2914.066 kb on + strand, within ccmH at 2914.074 kb on + strand, within ccmH at 2914.074 kb on + strand, within ccmH at 2914.074 kb on + strand, within ccmH at 2914.074 kb on + strand, within ccmH at 2914.074 kb on + strand, within ccmH at 2914.075 kb on - strand, within ccmH at 2914.075 kb on - strand, within ccmH at 2914.075 kb on - strand, within ccmH at 2914.147 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RB51 remove 2,911,627 + ccmF NOLOHH_14880 0.48 +0.7 2,911,639 + ccmF NOLOHH_14880 0.49 +0.5 2,911,782 + ccmF NOLOHH_14880 0.56 -0.3 2,911,785 + ccmF NOLOHH_14880 0.57 -1.2 2,911,785 + ccmF NOLOHH_14880 0.57 +0.8 2,911,834 + ccmF NOLOHH_14880 0.59 -0.1 2,912,204 + ccmF NOLOHH_14880 0.78 -0.5 2,912,204 + ccmF NOLOHH_14880 0.78 -0.3 2,912,384 + ccmF NOLOHH_14880 0.87 +0.3 2,912,384 + ccmF NOLOHH_14880 0.87 -0.2 2,912,384 + ccmF NOLOHH_14880 0.87 +0.3 2,912,384 + ccmF NOLOHH_14880 0.87 -1.1 2,912,447 + +0.8 2,912,501 + +0.5 2,912,639 + -2.6 2,912,938 + dsbE NOLOHH_14885 0.56 -1.8 2,912,938 + dsbE NOLOHH_14885 0.56 +0.1 2,912,940 + dsbE NOLOHH_14885 0.56 -0.1 2,913,026 + dsbE NOLOHH_14885 0.72 -0.6 2,913,160 + +0.8 2,913,160 + +0.1 2,913,160 + +0.1 2,913,161 - +0.7 2,913,378 + ccmH NOLOHH_14890 0.19 +0.4 2,913,423 + ccmH NOLOHH_14890 0.23 -0.5 2,913,423 + ccmH NOLOHH_14890 0.23 +0.5 2,913,425 + ccmH NOLOHH_14890 0.23 -0.6 2,913,425 + ccmH NOLOHH_14890 0.23 +0.7 2,913,426 - ccmH NOLOHH_14890 0.23 +0.3 2,913,457 - ccmH NOLOHH_14890 0.26 +1.4 2,913,457 - ccmH NOLOHH_14890 0.26 +0.6 2,913,605 + ccmH NOLOHH_14890 0.40 -0.6 2,913,605 + ccmH NOLOHH_14890 0.40 +1.8 2,913,672 + ccmH NOLOHH_14890 0.47 -1.9 2,913,672 + ccmH NOLOHH_14890 0.47 +1.4 2,913,673 - ccmH NOLOHH_14890 0.47 -0.8 2,913,844 + ccmH NOLOHH_14890 0.63 +0.4 2,913,844 + ccmH NOLOHH_14890 0.63 +0.0 2,913,844 + ccmH NOLOHH_14890 0.63 -0.2 2,913,844 + ccmH NOLOHH_14890 0.63 +0.7 2,913,844 + ccmH NOLOHH_14890 0.63 -0.6 2,913,845 - ccmH NOLOHH_14890 0.63 +1.3 2,913,845 - ccmH NOLOHH_14890 0.63 -1.2 2,913,857 + ccmH NOLOHH_14890 0.64 +0.6 2,913,857 + ccmH NOLOHH_14890 0.64 +1.2 2,913,857 + ccmH NOLOHH_14890 0.64 -0.3 2,913,964 - ccmH NOLOHH_14890 0.74 -0.2 2,914,049 + ccmH NOLOHH_14890 0.83 +0.4 2,914,066 + ccmH NOLOHH_14890 0.84 +0.2 2,914,066 + ccmH NOLOHH_14890 0.84 +1.9 2,914,074 + ccmH NOLOHH_14890 0.85 -1.6 2,914,074 + ccmH NOLOHH_14890 0.85 -0.2 2,914,074 + ccmH NOLOHH_14890 0.85 +0.6 2,914,074 + ccmH NOLOHH_14890 0.85 -0.9 2,914,074 + ccmH NOLOHH_14890 0.85 +1.1 2,914,075 - ccmH NOLOHH_14890 0.85 +1.0 2,914,075 - ccmH NOLOHH_14890 0.85 -1.3 2,914,075 - ccmH NOLOHH_14890 0.85 -0.2 2,914,147 + +1.2
Or see this region's nucleotide sequence