Strain Fitness in Escherichia coli ECOR27 around NOLOHH_14885

Experiment: RB51

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntccmF and dsbE overlap by 4 nucleotidesdsbE and ccmH overlap by 4 nucleotides NOLOHH_14880: ccmF - cytochrome c-type biogenesis heme lyase CcmF, at 2,910,686 to 2,912,629 ccmF NOLOHH_14885: dsbE - thiol:disulfide interchange protein DsbE, at 2,912,626 to 2,913,183 dsbE NOLOHH_14890: ccmH - cytochrome c-type biogenesis thiol:disulfide oxidoreductase CcmH, at 2,913,180 to 2,914,232 ccmH Position (kb) 2912 2913 2914Strain fitness (log2 ratio) -2 -1 0 1 2at 2911.627 kb on + strand, within ccmFat 2911.639 kb on + strand, within ccmFat 2911.782 kb on + strand, within ccmFat 2911.785 kb on + strand, within ccmFat 2911.785 kb on + strand, within ccmFat 2911.834 kb on + strand, within ccmFat 2912.204 kb on + strand, within ccmFat 2912.204 kb on + strand, within ccmFat 2912.384 kb on + strand, within ccmFat 2912.384 kb on + strand, within ccmFat 2912.384 kb on + strand, within ccmFat 2912.384 kb on + strand, within ccmFat 2912.447 kb on + strandat 2912.501 kb on + strandat 2912.639 kb on + strandat 2912.938 kb on + strand, within dsbEat 2912.938 kb on + strand, within dsbEat 2912.940 kb on + strand, within dsbEat 2913.026 kb on + strand, within dsbEat 2913.160 kb on + strandat 2913.160 kb on + strandat 2913.160 kb on + strandat 2913.161 kb on - strandat 2913.378 kb on + strand, within ccmHat 2913.423 kb on + strand, within ccmHat 2913.423 kb on + strand, within ccmHat 2913.425 kb on + strand, within ccmHat 2913.425 kb on + strand, within ccmHat 2913.426 kb on - strand, within ccmHat 2913.457 kb on - strand, within ccmHat 2913.457 kb on - strand, within ccmHat 2913.605 kb on + strand, within ccmHat 2913.605 kb on + strand, within ccmHat 2913.672 kb on + strand, within ccmHat 2913.672 kb on + strand, within ccmHat 2913.673 kb on - strand, within ccmHat 2913.844 kb on + strand, within ccmHat 2913.844 kb on + strand, within ccmHat 2913.844 kb on + strand, within ccmHat 2913.844 kb on + strand, within ccmHat 2913.844 kb on + strand, within ccmHat 2913.845 kb on - strand, within ccmHat 2913.845 kb on - strand, within ccmHat 2913.857 kb on + strand, within ccmHat 2913.857 kb on + strand, within ccmHat 2913.857 kb on + strand, within ccmHat 2913.964 kb on - strand, within ccmHat 2914.049 kb on + strand, within ccmHat 2914.066 kb on + strand, within ccmHat 2914.066 kb on + strand, within ccmHat 2914.074 kb on + strand, within ccmHat 2914.074 kb on + strand, within ccmHat 2914.074 kb on + strand, within ccmHat 2914.074 kb on + strand, within ccmHat 2914.074 kb on + strand, within ccmHat 2914.075 kb on - strand, within ccmHat 2914.075 kb on - strand, within ccmHat 2914.075 kb on - strand, within ccmHat 2914.147 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RB51
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2,911,627 + ccmF NOLOHH_14880 0.48 +0.7
2,911,639 + ccmF NOLOHH_14880 0.49 +0.5
2,911,782 + ccmF NOLOHH_14880 0.56 -0.3
2,911,785 + ccmF NOLOHH_14880 0.57 -1.2
2,911,785 + ccmF NOLOHH_14880 0.57 +0.8
2,911,834 + ccmF NOLOHH_14880 0.59 -0.1
2,912,204 + ccmF NOLOHH_14880 0.78 -0.5
2,912,204 + ccmF NOLOHH_14880 0.78 -0.3
2,912,384 + ccmF NOLOHH_14880 0.87 +0.3
2,912,384 + ccmF NOLOHH_14880 0.87 -0.2
2,912,384 + ccmF NOLOHH_14880 0.87 +0.3
2,912,384 + ccmF NOLOHH_14880 0.87 -1.1
2,912,447 + +0.8
2,912,501 + +0.5
2,912,639 + -2.6
2,912,938 + dsbE NOLOHH_14885 0.56 -1.8
2,912,938 + dsbE NOLOHH_14885 0.56 +0.1
2,912,940 + dsbE NOLOHH_14885 0.56 -0.1
2,913,026 + dsbE NOLOHH_14885 0.72 -0.6
2,913,160 + +0.8
2,913,160 + +0.1
2,913,160 + +0.1
2,913,161 - +0.7
2,913,378 + ccmH NOLOHH_14890 0.19 +0.4
2,913,423 + ccmH NOLOHH_14890 0.23 -0.5
2,913,423 + ccmH NOLOHH_14890 0.23 +0.5
2,913,425 + ccmH NOLOHH_14890 0.23 -0.6
2,913,425 + ccmH NOLOHH_14890 0.23 +0.7
2,913,426 - ccmH NOLOHH_14890 0.23 +0.3
2,913,457 - ccmH NOLOHH_14890 0.26 +1.4
2,913,457 - ccmH NOLOHH_14890 0.26 +0.6
2,913,605 + ccmH NOLOHH_14890 0.40 -0.6
2,913,605 + ccmH NOLOHH_14890 0.40 +1.8
2,913,672 + ccmH NOLOHH_14890 0.47 -1.9
2,913,672 + ccmH NOLOHH_14890 0.47 +1.4
2,913,673 - ccmH NOLOHH_14890 0.47 -0.8
2,913,844 + ccmH NOLOHH_14890 0.63 +0.4
2,913,844 + ccmH NOLOHH_14890 0.63 +0.0
2,913,844 + ccmH NOLOHH_14890 0.63 -0.2
2,913,844 + ccmH NOLOHH_14890 0.63 +0.7
2,913,844 + ccmH NOLOHH_14890 0.63 -0.6
2,913,845 - ccmH NOLOHH_14890 0.63 +1.3
2,913,845 - ccmH NOLOHH_14890 0.63 -1.2
2,913,857 + ccmH NOLOHH_14890 0.64 +0.6
2,913,857 + ccmH NOLOHH_14890 0.64 +1.2
2,913,857 + ccmH NOLOHH_14890 0.64 -0.3
2,913,964 - ccmH NOLOHH_14890 0.74 -0.2
2,914,049 + ccmH NOLOHH_14890 0.83 +0.4
2,914,066 + ccmH NOLOHH_14890 0.84 +0.2
2,914,066 + ccmH NOLOHH_14890 0.84 +1.9
2,914,074 + ccmH NOLOHH_14890 0.85 -1.6
2,914,074 + ccmH NOLOHH_14890 0.85 -0.2
2,914,074 + ccmH NOLOHH_14890 0.85 +0.6
2,914,074 + ccmH NOLOHH_14890 0.85 -0.9
2,914,074 + ccmH NOLOHH_14890 0.85 +1.1
2,914,075 - ccmH NOLOHH_14890 0.85 +1.0
2,914,075 - ccmH NOLOHH_14890 0.85 -1.3
2,914,075 - ccmH NOLOHH_14890 0.85 -0.2
2,914,147 + +1.2

Or see this region's nucleotide sequence