Experiment: RB51
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tnaA and tnaC are separated by 220 nucleotides tnaC and NOLOHH_07125 are separated by 242 nucleotides NOLOHH_07125 and yidC are separated by 105 nucleotides
NOLOHH_07115: tnaA - tryptophanase, at 1,349,608 to 1,351,023
tnaA
NOLOHH_07120: tnaC - tryptophanase leader peptide, at 1,351,244 to 1,351,318
tnaC
NOLOHH_07125: NOLOHH_07125 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE, at 1,351,561 to 1,352,925
_07125
NOLOHH_07130: yidC - membrane protein insertase YidC, at 1,353,031 to 1,354,677
yidC
Position (kb)
1351
1352
1353 Strain fitness (log2 ratio)
-2
-1
0
1 at 1350.563 kb on + strand, within tnaA at 1350.563 kb on + strand, within tnaA at 1350.564 kb on - strand, within tnaA at 1350.564 kb on - strand, within tnaA at 1350.564 kb on - strand, within tnaA at 1350.571 kb on - strand, within tnaA at 1350.623 kb on + strand, within tnaA at 1350.624 kb on - strand, within tnaA at 1350.624 kb on - strand, within tnaA at 1350.624 kb on - strand, within tnaA at 1350.624 kb on - strand, within tnaA at 1350.624 kb on - strand, within tnaA at 1350.624 kb on - strand, within tnaA at 1350.696 kb on + strand, within tnaA at 1350.696 kb on + strand, within tnaA at 1350.699 kb on - strand, within tnaA at 1350.699 kb on - strand, within tnaA at 1350.782 kb on + strand, within tnaA at 1350.783 kb on - strand, within tnaA at 1350.785 kb on + strand, within tnaA at 1350.785 kb on + strand, within tnaA at 1350.786 kb on - strand, within tnaA at 1350.786 kb on - strand, within tnaA at 1350.803 kb on + strand, within tnaA at 1350.837 kb on + strand, within tnaA at 1350.837 kb on + strand, within tnaA at 1350.838 kb on - strand, within tnaA at 1350.838 kb on - strand, within tnaA at 1350.875 kb on - strand, within tnaA at 1350.957 kb on + strand at 1350.957 kb on + strand at 1350.958 kb on - strand at 1350.960 kb on + strand at 1350.960 kb on + strand at 1351.046 kb on - strand at 1351.049 kb on + strand at 1351.101 kb on - strand at 1351.103 kb on - strand at 1351.103 kb on - strand at 1351.104 kb on + strand at 1351.104 kb on + strand at 1351.104 kb on + strand at 1351.104 kb on + strand at 1351.186 kb on + strand at 1351.230 kb on + strand at 1351.268 kb on - strand, within tnaC at 1351.301 kb on + strand, within tnaC at 1351.302 kb on - strand, within tnaC at 1351.302 kb on - strand, within tnaC at 1351.302 kb on - strand, within tnaC at 1351.302 kb on - strand, within tnaC at 1351.302 kb on - strand, within tnaC at 1351.302 kb on - strand, within tnaC at 1351.303 kb on + strand, within tnaC at 1351.303 kb on + strand, within tnaC at 1351.304 kb on - strand, within tnaC at 1351.304 kb on - strand, within tnaC at 1351.307 kb on + strand, within tnaC at 1351.308 kb on - strand, within tnaC at 1351.308 kb on - strand, within tnaC at 1351.349 kb on - strand at 1351.354 kb on - strand at 1351.356 kb on - strand at 1351.356 kb on - strand at 1351.358 kb on + strand at 1351.359 kb on - strand at 1351.429 kb on + strand at 1351.552 kb on + strand at 1351.566 kb on + strand at 1351.567 kb on - strand at 1351.693 kb on + strand at 1351.747 kb on + strand, within NOLOHH_07125 at 1351.748 kb on - strand, within NOLOHH_07125 at 1351.920 kb on + strand, within NOLOHH_07125 at 1352.077 kb on - strand, within NOLOHH_07125 at 1352.077 kb on - strand, within NOLOHH_07125 at 1352.125 kb on - strand, within NOLOHH_07125 at 1352.125 kb on - strand, within NOLOHH_07125 at 1352.125 kb on - strand, within NOLOHH_07125 at 1352.152 kb on - strand, within NOLOHH_07125 at 1352.195 kb on - strand, within NOLOHH_07125 at 1352.295 kb on + strand, within NOLOHH_07125 at 1352.490 kb on + strand, within NOLOHH_07125 at 1352.557 kb on + strand, within NOLOHH_07125 at 1352.802 kb on + strand at 1352.802 kb on + strand at 1352.806 kb on + strand at 1352.806 kb on + strand at 1352.806 kb on + strand at 1352.806 kb on + strand at 1352.806 kb on + strand at 1353.008 kb on + strand at 1353.009 kb on - strand at 1353.055 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RB51 remove 1,350,563 + tnaA NOLOHH_07115 0.67 +0.2 1,350,563 + tnaA NOLOHH_07115 0.67 -0.3 1,350,564 - tnaA NOLOHH_07115 0.68 +0.3 1,350,564 - tnaA NOLOHH_07115 0.68 +0.5 1,350,564 - tnaA NOLOHH_07115 0.68 -0.3 1,350,571 - tnaA NOLOHH_07115 0.68 +0.6 1,350,623 + tnaA NOLOHH_07115 0.72 -0.4 1,350,624 - tnaA NOLOHH_07115 0.72 -1.2 1,350,624 - tnaA NOLOHH_07115 0.72 -0.1 1,350,624 - tnaA NOLOHH_07115 0.72 +0.2 1,350,624 - tnaA NOLOHH_07115 0.72 +0.4 1,350,624 - tnaA NOLOHH_07115 0.72 -0.7 1,350,624 - tnaA NOLOHH_07115 0.72 +0.2 1,350,696 + tnaA NOLOHH_07115 0.77 -0.1 1,350,696 + tnaA NOLOHH_07115 0.77 -1.1 1,350,699 - tnaA NOLOHH_07115 0.77 -0.7 1,350,699 - tnaA NOLOHH_07115 0.77 +0.3 1,350,782 + tnaA NOLOHH_07115 0.83 +0.5 1,350,783 - tnaA NOLOHH_07115 0.83 +0.3 1,350,785 + tnaA NOLOHH_07115 0.83 -0.3 1,350,785 + tnaA NOLOHH_07115 0.83 -0.0 1,350,786 - tnaA NOLOHH_07115 0.83 +1.0 1,350,786 - tnaA NOLOHH_07115 0.83 +0.5 1,350,803 + tnaA NOLOHH_07115 0.84 +0.3 1,350,837 + tnaA NOLOHH_07115 0.87 -0.1 1,350,837 + tnaA NOLOHH_07115 0.87 +0.0 1,350,838 - tnaA NOLOHH_07115 0.87 +0.8 1,350,838 - tnaA NOLOHH_07115 0.87 -0.8 1,350,875 - tnaA NOLOHH_07115 0.89 -0.4 1,350,957 + -2.7 1,350,957 + +1.1 1,350,958 - +0.0 1,350,960 + +1.4 1,350,960 + -0.4 1,351,046 - -1.7 1,351,049 + +0.7 1,351,101 - +1.1 1,351,103 - +0.2 1,351,103 - -0.2 1,351,104 + +0.3 1,351,104 + -0.9 1,351,104 + -0.5 1,351,104 + +0.3 1,351,186 + +0.0 1,351,230 + -0.8 1,351,268 - tnaC NOLOHH_07120 0.32 +0.1 1,351,301 + tnaC NOLOHH_07120 0.76 -0.5 1,351,302 - tnaC NOLOHH_07120 0.77 +0.2 1,351,302 - tnaC NOLOHH_07120 0.77 -0.4 1,351,302 - tnaC NOLOHH_07120 0.77 +0.0 1,351,302 - tnaC NOLOHH_07120 0.77 +0.1 1,351,302 - tnaC NOLOHH_07120 0.77 +0.5 1,351,302 - tnaC NOLOHH_07120 0.77 -0.5 1,351,303 + tnaC NOLOHH_07120 0.79 -0.3 1,351,303 + tnaC NOLOHH_07120 0.79 -1.6 1,351,304 - tnaC NOLOHH_07120 0.80 -0.0 1,351,304 - tnaC NOLOHH_07120 0.80 +0.3 1,351,307 + tnaC NOLOHH_07120 0.84 -0.4 1,351,308 - tnaC NOLOHH_07120 0.85 +0.3 1,351,308 - tnaC NOLOHH_07120 0.85 +0.6 1,351,349 - +1.1 1,351,354 - -0.1 1,351,356 - -0.2 1,351,356 - +0.9 1,351,358 + -0.3 1,351,359 - -0.2 1,351,429 + +0.1 1,351,552 + -0.3 1,351,566 + +1.1 1,351,567 - -1.7 1,351,693 + -0.0 1,351,747 + NOLOHH_07125 0.14 -0.1 1,351,748 - NOLOHH_07125 0.14 +0.8 1,351,920 + NOLOHH_07125 0.26 -0.1 1,352,077 - NOLOHH_07125 0.38 -1.4 1,352,077 - NOLOHH_07125 0.38 -2.3 1,352,125 - NOLOHH_07125 0.41 -0.1 1,352,125 - NOLOHH_07125 0.41 -0.8 1,352,125 - NOLOHH_07125 0.41 -1.5 1,352,152 - NOLOHH_07125 0.43 +0.8 1,352,195 - NOLOHH_07125 0.46 +0.9 1,352,295 + NOLOHH_07125 0.54 -1.7 1,352,490 + NOLOHH_07125 0.68 +0.6 1,352,557 + NOLOHH_07125 0.73 -0.4 1,352,802 + -0.7 1,352,802 + -0.1 1,352,806 + -2.0 1,352,806 + -1.2 1,352,806 + -2.5 1,352,806 + -1.1 1,352,806 + -0.5 1,353,008 + -0.4 1,353,009 - +0.4 1,353,055 - -0.7
Or see this region's nucleotide sequence