Strain Fitness in Escherichia coli ECOR27 around NOLOHH_07125

Experiment: RB51

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttnaA and tnaC are separated by 220 nucleotidestnaC and NOLOHH_07125 are separated by 242 nucleotidesNOLOHH_07125 and yidC are separated by 105 nucleotides NOLOHH_07115: tnaA - tryptophanase, at 1,349,608 to 1,351,023 tnaA NOLOHH_07120: tnaC - tryptophanase leader peptide, at 1,351,244 to 1,351,318 tnaC NOLOHH_07125: NOLOHH_07125 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE, at 1,351,561 to 1,352,925 _07125 NOLOHH_07130: yidC - membrane protein insertase YidC, at 1,353,031 to 1,354,677 yidC Position (kb) 1351 1352 1353Strain fitness (log2 ratio) -2 -1 0 1at 1350.563 kb on + strand, within tnaAat 1350.563 kb on + strand, within tnaAat 1350.564 kb on - strand, within tnaAat 1350.564 kb on - strand, within tnaAat 1350.564 kb on - strand, within tnaAat 1350.571 kb on - strand, within tnaAat 1350.623 kb on + strand, within tnaAat 1350.624 kb on - strand, within tnaAat 1350.624 kb on - strand, within tnaAat 1350.624 kb on - strand, within tnaAat 1350.624 kb on - strand, within tnaAat 1350.624 kb on - strand, within tnaAat 1350.624 kb on - strand, within tnaAat 1350.696 kb on + strand, within tnaAat 1350.696 kb on + strand, within tnaAat 1350.699 kb on - strand, within tnaAat 1350.699 kb on - strand, within tnaAat 1350.782 kb on + strand, within tnaAat 1350.783 kb on - strand, within tnaAat 1350.785 kb on + strand, within tnaAat 1350.785 kb on + strand, within tnaAat 1350.786 kb on - strand, within tnaAat 1350.786 kb on - strand, within tnaAat 1350.803 kb on + strand, within tnaAat 1350.837 kb on + strand, within tnaAat 1350.837 kb on + strand, within tnaAat 1350.838 kb on - strand, within tnaAat 1350.838 kb on - strand, within tnaAat 1350.875 kb on - strand, within tnaAat 1350.957 kb on + strandat 1350.957 kb on + strandat 1350.958 kb on - strandat 1350.960 kb on + strandat 1350.960 kb on + strandat 1351.046 kb on - strandat 1351.049 kb on + strandat 1351.101 kb on - strandat 1351.103 kb on - strandat 1351.103 kb on - strandat 1351.104 kb on + strandat 1351.104 kb on + strandat 1351.104 kb on + strandat 1351.104 kb on + strandat 1351.186 kb on + strandat 1351.230 kb on + strandat 1351.268 kb on - strand, within tnaCat 1351.301 kb on + strand, within tnaCat 1351.302 kb on - strand, within tnaCat 1351.302 kb on - strand, within tnaCat 1351.302 kb on - strand, within tnaCat 1351.302 kb on - strand, within tnaCat 1351.302 kb on - strand, within tnaCat 1351.302 kb on - strand, within tnaCat 1351.303 kb on + strand, within tnaCat 1351.303 kb on + strand, within tnaCat 1351.304 kb on - strand, within tnaCat 1351.304 kb on - strand, within tnaCat 1351.307 kb on + strand, within tnaCat 1351.308 kb on - strand, within tnaCat 1351.308 kb on - strand, within tnaCat 1351.349 kb on - strandat 1351.354 kb on - strandat 1351.356 kb on - strandat 1351.356 kb on - strandat 1351.358 kb on + strandat 1351.359 kb on - strandat 1351.429 kb on + strandat 1351.552 kb on + strandat 1351.566 kb on + strandat 1351.567 kb on - strandat 1351.693 kb on + strandat 1351.747 kb on + strand, within NOLOHH_07125at 1351.748 kb on - strand, within NOLOHH_07125at 1351.920 kb on + strand, within NOLOHH_07125at 1352.077 kb on - strand, within NOLOHH_07125at 1352.077 kb on - strand, within NOLOHH_07125at 1352.125 kb on - strand, within NOLOHH_07125at 1352.125 kb on - strand, within NOLOHH_07125at 1352.125 kb on - strand, within NOLOHH_07125at 1352.152 kb on - strand, within NOLOHH_07125at 1352.195 kb on - strand, within NOLOHH_07125at 1352.295 kb on + strand, within NOLOHH_07125at 1352.490 kb on + strand, within NOLOHH_07125at 1352.557 kb on + strand, within NOLOHH_07125at 1352.802 kb on + strandat 1352.802 kb on + strandat 1352.806 kb on + strandat 1352.806 kb on + strandat 1352.806 kb on + strandat 1352.806 kb on + strandat 1352.806 kb on + strandat 1353.008 kb on + strandat 1353.009 kb on - strandat 1353.055 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RB51
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1,350,563 + tnaA NOLOHH_07115 0.67 +0.2
1,350,563 + tnaA NOLOHH_07115 0.67 -0.3
1,350,564 - tnaA NOLOHH_07115 0.68 +0.3
1,350,564 - tnaA NOLOHH_07115 0.68 +0.5
1,350,564 - tnaA NOLOHH_07115 0.68 -0.3
1,350,571 - tnaA NOLOHH_07115 0.68 +0.6
1,350,623 + tnaA NOLOHH_07115 0.72 -0.4
1,350,624 - tnaA NOLOHH_07115 0.72 -1.2
1,350,624 - tnaA NOLOHH_07115 0.72 -0.1
1,350,624 - tnaA NOLOHH_07115 0.72 +0.2
1,350,624 - tnaA NOLOHH_07115 0.72 +0.4
1,350,624 - tnaA NOLOHH_07115 0.72 -0.7
1,350,624 - tnaA NOLOHH_07115 0.72 +0.2
1,350,696 + tnaA NOLOHH_07115 0.77 -0.1
1,350,696 + tnaA NOLOHH_07115 0.77 -1.1
1,350,699 - tnaA NOLOHH_07115 0.77 -0.7
1,350,699 - tnaA NOLOHH_07115 0.77 +0.3
1,350,782 + tnaA NOLOHH_07115 0.83 +0.5
1,350,783 - tnaA NOLOHH_07115 0.83 +0.3
1,350,785 + tnaA NOLOHH_07115 0.83 -0.3
1,350,785 + tnaA NOLOHH_07115 0.83 -0.0
1,350,786 - tnaA NOLOHH_07115 0.83 +1.0
1,350,786 - tnaA NOLOHH_07115 0.83 +0.5
1,350,803 + tnaA NOLOHH_07115 0.84 +0.3
1,350,837 + tnaA NOLOHH_07115 0.87 -0.1
1,350,837 + tnaA NOLOHH_07115 0.87 +0.0
1,350,838 - tnaA NOLOHH_07115 0.87 +0.8
1,350,838 - tnaA NOLOHH_07115 0.87 -0.8
1,350,875 - tnaA NOLOHH_07115 0.89 -0.4
1,350,957 + -2.7
1,350,957 + +1.1
1,350,958 - +0.0
1,350,960 + +1.4
1,350,960 + -0.4
1,351,046 - -1.7
1,351,049 + +0.7
1,351,101 - +1.1
1,351,103 - +0.2
1,351,103 - -0.2
1,351,104 + +0.3
1,351,104 + -0.9
1,351,104 + -0.5
1,351,104 + +0.3
1,351,186 + +0.0
1,351,230 + -0.8
1,351,268 - tnaC NOLOHH_07120 0.32 +0.1
1,351,301 + tnaC NOLOHH_07120 0.76 -0.5
1,351,302 - tnaC NOLOHH_07120 0.77 +0.2
1,351,302 - tnaC NOLOHH_07120 0.77 -0.4
1,351,302 - tnaC NOLOHH_07120 0.77 +0.0
1,351,302 - tnaC NOLOHH_07120 0.77 +0.1
1,351,302 - tnaC NOLOHH_07120 0.77 +0.5
1,351,302 - tnaC NOLOHH_07120 0.77 -0.5
1,351,303 + tnaC NOLOHH_07120 0.79 -0.3
1,351,303 + tnaC NOLOHH_07120 0.79 -1.6
1,351,304 - tnaC NOLOHH_07120 0.80 -0.0
1,351,304 - tnaC NOLOHH_07120 0.80 +0.3
1,351,307 + tnaC NOLOHH_07120 0.84 -0.4
1,351,308 - tnaC NOLOHH_07120 0.85 +0.3
1,351,308 - tnaC NOLOHH_07120 0.85 +0.6
1,351,349 - +1.1
1,351,354 - -0.1
1,351,356 - -0.2
1,351,356 - +0.9
1,351,358 + -0.3
1,351,359 - -0.2
1,351,429 + +0.1
1,351,552 + -0.3
1,351,566 + +1.1
1,351,567 - -1.7
1,351,693 + -0.0
1,351,747 + NOLOHH_07125 0.14 -0.1
1,351,748 - NOLOHH_07125 0.14 +0.8
1,351,920 + NOLOHH_07125 0.26 -0.1
1,352,077 - NOLOHH_07125 0.38 -1.4
1,352,077 - NOLOHH_07125 0.38 -2.3
1,352,125 - NOLOHH_07125 0.41 -0.1
1,352,125 - NOLOHH_07125 0.41 -0.8
1,352,125 - NOLOHH_07125 0.41 -1.5
1,352,152 - NOLOHH_07125 0.43 +0.8
1,352,195 - NOLOHH_07125 0.46 +0.9
1,352,295 + NOLOHH_07125 0.54 -1.7
1,352,490 + NOLOHH_07125 0.68 +0.6
1,352,557 + NOLOHH_07125 0.73 -0.4
1,352,802 + -0.7
1,352,802 + -0.1
1,352,806 + -2.0
1,352,806 + -1.2
1,352,806 + -2.5
1,352,806 + -1.1
1,352,806 + -0.5
1,353,008 + -0.4
1,353,009 - +0.4
1,353,055 - -0.7

Or see this region's nucleotide sequence