Experiment: RB51
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dinF and lexA are separated by 72 nucleotides lexA and dgkA are separated by 109 nucleotides dgkA and plsB are separated by 170 nucleotides
NOLOHH_05215: dinF - MATE family efflux transporter DinF, at 959,486 to 960,811
dinF
NOLOHH_05220: lexA - transcriptional repressor LexA, at 960,884 to 961,492
lexA
NOLOHH_05225: dgkA - diacylglycerol kinase, at 961,602 to 961,970
dgkA
NOLOHH_05230: plsB - glycerol-3-phosphate 1-O-acyltransferase PlsB, at 962,141 to 964,564
plsB
Position (kb)
961
962 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 960.617 kb on + strand, within dinF at 960.617 kb on + strand, within dinF at 960.681 kb on + strand at 960.681 kb on + strand at 960.681 kb on + strand at 960.691 kb on + strand at 960.746 kb on - strand at 960.788 kb on - strand at 960.880 kb on + strand at 960.880 kb on + strand at 960.880 kb on + strand at 960.880 kb on + strand at 960.880 kb on + strand at 960.881 kb on - strand at 960.886 kb on - strand at 960.886 kb on - strand at 961.509 kb on - strand at 961.513 kb on - strand at 961.530 kb on - strand at 961.532 kb on - strand at 961.532 kb on - strand at 961.532 kb on - strand at 961.559 kb on + strand at 961.560 kb on - strand at 961.560 kb on - strand at 961.572 kb on - strand at 961.572 kb on - strand at 961.572 kb on - strand at 961.620 kb on + strand at 961.637 kb on + strand at 961.638 kb on - strand at 961.638 kb on - strand at 961.682 kb on + strand, within dgkA at 961.683 kb on - strand, within dgkA at 961.711 kb on + strand, within dgkA at 961.711 kb on + strand, within dgkA at 961.712 kb on - strand, within dgkA at 961.905 kb on + strand, within dgkA at 961.905 kb on + strand, within dgkA at 961.906 kb on - strand, within dgkA at 961.934 kb on + strand at 961.934 kb on + strand at 961.935 kb on - strand at 961.938 kb on - strand at 961.938 kb on - strand at 961.958 kb on + strand at 961.958 kb on + strand at 961.958 kb on + strand at 961.985 kb on + strand at 961.985 kb on + strand at 961.986 kb on - strand at 961.990 kb on + strand at 961.990 kb on + strand at 961.990 kb on + strand at 961.990 kb on + strand at 962.002 kb on + strand at 962.010 kb on + strand at 962.011 kb on - strand at 962.016 kb on + strand at 962.017 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RB51 remove 960,617 + dinF NOLOHH_05215 0.85 -0.8 960,617 + dinF NOLOHH_05215 0.85 -0.4 960,681 + +0.6 960,681 + +0.3 960,681 + +0.2 960,691 + +0.4 960,746 - +0.3 960,788 - -0.6 960,880 + +0.3 960,880 + +0.7 960,880 + +0.2 960,880 + +0.7 960,880 + +0.6 960,881 - -1.7 960,886 - -0.1 960,886 - +0.5 961,509 - -0.7 961,513 - -0.3 961,530 - -0.6 961,532 - -0.8 961,532 - -1.6 961,532 - -0.2 961,559 + -1.0 961,560 - -0.2 961,560 - -1.2 961,572 - +0.3 961,572 - -0.5 961,572 - -0.8 961,620 + -0.9 961,637 + -1.1 961,638 - -0.2 961,638 - -1.6 961,682 + dgkA NOLOHH_05225 0.22 -0.9 961,683 - dgkA NOLOHH_05225 0.22 -2.5 961,711 + dgkA NOLOHH_05225 0.30 -0.3 961,711 + dgkA NOLOHH_05225 0.30 -1.1 961,712 - dgkA NOLOHH_05225 0.30 -0.1 961,905 + dgkA NOLOHH_05225 0.82 +0.0 961,905 + dgkA NOLOHH_05225 0.82 -1.3 961,906 - dgkA NOLOHH_05225 0.82 -0.3 961,934 + -1.0 961,934 + -0.7 961,935 - -0.3 961,938 - +0.0 961,938 - +0.1 961,958 + -1.3 961,958 + -0.7 961,958 + +0.7 961,985 + -0.2 961,985 + -0.2 961,986 - -0.4 961,990 + -0.7 961,990 + +0.4 961,990 + +0.0 961,990 + -0.4 962,002 + +0.5 962,010 + -3.5 962,011 - +0.0 962,016 + -0.3 962,017 - -0.0
Or see this region's nucleotide sequence