Strain Fitness in Escherichia coli ECOR27 around NOLOHH_05225

Experiment: RB51

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdinF and lexA are separated by 72 nucleotideslexA and dgkA are separated by 109 nucleotidesdgkA and plsB are separated by 170 nucleotides NOLOHH_05215: dinF - MATE family efflux transporter DinF, at 959,486 to 960,811 dinF NOLOHH_05220: lexA - transcriptional repressor LexA, at 960,884 to 961,492 lexA NOLOHH_05225: dgkA - diacylglycerol kinase, at 961,602 to 961,970 dgkA NOLOHH_05230: plsB - glycerol-3-phosphate 1-O-acyltransferase PlsB, at 962,141 to 964,564 plsB Position (kb) 961 962Strain fitness (log2 ratio) -3 -2 -1 0 1at 960.617 kb on + strand, within dinFat 960.617 kb on + strand, within dinFat 960.681 kb on + strandat 960.681 kb on + strandat 960.681 kb on + strandat 960.691 kb on + strandat 960.746 kb on - strandat 960.788 kb on - strandat 960.880 kb on + strandat 960.880 kb on + strandat 960.880 kb on + strandat 960.880 kb on + strandat 960.880 kb on + strandat 960.881 kb on - strandat 960.886 kb on - strandat 960.886 kb on - strandat 961.509 kb on - strandat 961.513 kb on - strandat 961.530 kb on - strandat 961.532 kb on - strandat 961.532 kb on - strandat 961.532 kb on - strandat 961.559 kb on + strandat 961.560 kb on - strandat 961.560 kb on - strandat 961.572 kb on - strandat 961.572 kb on - strandat 961.572 kb on - strandat 961.620 kb on + strandat 961.637 kb on + strandat 961.638 kb on - strandat 961.638 kb on - strandat 961.682 kb on + strand, within dgkAat 961.683 kb on - strand, within dgkAat 961.711 kb on + strand, within dgkAat 961.711 kb on + strand, within dgkAat 961.712 kb on - strand, within dgkAat 961.905 kb on + strand, within dgkAat 961.905 kb on + strand, within dgkAat 961.906 kb on - strand, within dgkAat 961.934 kb on + strandat 961.934 kb on + strandat 961.935 kb on - strandat 961.938 kb on - strandat 961.938 kb on - strandat 961.958 kb on + strandat 961.958 kb on + strandat 961.958 kb on + strandat 961.985 kb on + strandat 961.985 kb on + strandat 961.986 kb on - strandat 961.990 kb on + strandat 961.990 kb on + strandat 961.990 kb on + strandat 961.990 kb on + strandat 962.002 kb on + strandat 962.010 kb on + strandat 962.011 kb on - strandat 962.016 kb on + strandat 962.017 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RB51
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960,617 + dinF NOLOHH_05215 0.85 -0.8
960,617 + dinF NOLOHH_05215 0.85 -0.4
960,681 + +0.6
960,681 + +0.3
960,681 + +0.2
960,691 + +0.4
960,746 - +0.3
960,788 - -0.6
960,880 + +0.3
960,880 + +0.7
960,880 + +0.2
960,880 + +0.7
960,880 + +0.6
960,881 - -1.7
960,886 - -0.1
960,886 - +0.5
961,509 - -0.7
961,513 - -0.3
961,530 - -0.6
961,532 - -0.8
961,532 - -1.6
961,532 - -0.2
961,559 + -1.0
961,560 - -0.2
961,560 - -1.2
961,572 - +0.3
961,572 - -0.5
961,572 - -0.8
961,620 + -0.9
961,637 + -1.1
961,638 - -0.2
961,638 - -1.6
961,682 + dgkA NOLOHH_05225 0.22 -0.9
961,683 - dgkA NOLOHH_05225 0.22 -2.5
961,711 + dgkA NOLOHH_05225 0.30 -0.3
961,711 + dgkA NOLOHH_05225 0.30 -1.1
961,712 - dgkA NOLOHH_05225 0.30 -0.1
961,905 + dgkA NOLOHH_05225 0.82 +0.0
961,905 + dgkA NOLOHH_05225 0.82 -1.3
961,906 - dgkA NOLOHH_05225 0.82 -0.3
961,934 + -1.0
961,934 + -0.7
961,935 - -0.3
961,938 - +0.0
961,938 - +0.1
961,958 + -1.3
961,958 + -0.7
961,958 + +0.7
961,985 + -0.2
961,985 + -0.2
961,986 - -0.4
961,990 + -0.7
961,990 + +0.4
961,990 + +0.0
961,990 + -0.4
962,002 + +0.5
962,010 + -3.5
962,011 - +0.0
962,016 + -0.3
962,017 - -0.0

Or see this region's nucleotide sequence