Strain Fitness in Escherichia coli ECOR27 around NOLOHH_00790

Experiment: RB51

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_00780 and fimC are separated by 30 nucleotidesfimC and fimA are separated by 219 nucleotidesfimA and NOLOHH_00795 are separated by 480 nucleotides NOLOHH_00780: NOLOHH_00780 - Usher protein, at 42,670 to 43,404 _00780 NOLOHH_00785: fimC - type 1 fimbria chaperone FimC, at 43,435 to 44,127 fimC NOLOHH_00790: fimA - type 1 fimbrial major subunit FimA, at 44,347 to 44,889 fimA NOLOHH_00795: NOLOHH_00795 - Bifunctional protein FolD, at 45,370 to 46,236 _00795 Position (kb) 44 45Strain fitness (log2 ratio) -2 -1 0 1at 43.389 kb on + strandat 43.441 kb on + strandat 43.924 kb on + strand, within fimCat 44.238 kb on + strandat 44.299 kb on + strandat 44.299 kb on + strandat 44.300 kb on - strandat 44.310 kb on - strandat 44.362 kb on - strandat 44.829 kb on - strand, within fimAat 44.829 kb on - strand, within fimAat 44.931 kb on - strandat 45.343 kb on + strandat 45.343 kb on + strandat 45.347 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RB51
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43,389 + -0.7
43,441 + -1.3
43,924 + fimC NOLOHH_00785 0.71 -0.3
44,238 + +0.2
44,299 + -0.9
44,299 + -0.7
44,300 - +0.3
44,310 - +0.8
44,362 - +0.9
44,829 - fimA NOLOHH_00790 0.89 -2.1
44,829 - fimA NOLOHH_00790 0.89 -0.3
44,931 - -0.4
45,343 + -0.1
45,343 + -0.6
45,347 + +0.6

Or see this region's nucleotide sequence