Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS16355

Experiment: Xylan from corn core; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylan from corn core; autoclaved 2.5 mg/ml (C)
4,165,461	-		ABI39_RS16345	0.89	-1.5
4,165,461	-		ABI39_RS16345	0.89	+0.2
4,165,663	+				-0.1
4,165,792	-				-0.0
4,165,826	+		ABI39_RS16350	0.10	-0.0
4,165,856	+		ABI39_RS16350	0.15	-0.9
4,165,858	+		ABI39_RS16350	0.15	+0.5
4,165,858	+		ABI39_RS16350	0.15	-0.2
4,165,859	-		ABI39_RS16350	0.15	+0.6
4,165,861	-		ABI39_RS16350	0.15	-1.0
4,165,861	-		ABI39_RS16350	0.15	-1.2
4,165,865	-		ABI39_RS16350	0.16	-1.0
4,165,865	-		ABI39_RS16350	0.16	+0.1
4,165,882	+		ABI39_RS16350	0.18	+0.3
4,165,883	-		ABI39_RS16350	0.19	-0.1
4,165,976	-		ABI39_RS16350	0.32	-0.1
4,166,070	-		ABI39_RS16350	0.46	-0.5
4,166,072	-		ABI39_RS16350	0.46	-0.4
4,166,092	+		ABI39_RS16350	0.49	-0.9
4,166,093	-		ABI39_RS16350	0.50	-0.1
4,166,122	+		ABI39_RS16350	0.54	+0.3
4,166,122	+		ABI39_RS16350	0.54	-1.7
4,166,122	+		ABI39_RS16350	0.54	+0.1
4,166,123	-		ABI39_RS16350	0.54	-0.3
4,166,198	+		ABI39_RS16350	0.65	-0.4
4,166,260	+		ABI39_RS16350	0.74	+0.2
4,166,260	+		ABI39_RS16350	0.74	-1.1
4,166,261	-		ABI39_RS16350	0.74	+0.4
4,166,261	-		ABI39_RS16350	0.74	-0.1
4,166,261	-		ABI39_RS16350	0.74	+0.4
4,166,261	-		ABI39_RS16350	0.74	+0.2
4,166,264	+		ABI39_RS16350	0.75	-0.7
4,166,386	+				+0.0
4,166,398	+				-0.5
4,166,435	-				-0.2
4,166,527	+				+0.5
4,166,553	+		ABI39_RS16355	0.12	-0.4
4,166,591	-		ABI39_RS16355	0.17	+0.7
4,166,636	-		ABI39_RS16355	0.22	+0.2
4,166,683	+		ABI39_RS16355	0.27	+0.3
4,166,758	+		ABI39_RS16355	0.36	-0.4
4,166,842	+		ABI39_RS16355	0.46	-1.4
4,166,908	-		ABI39_RS16355	0.53	+0.1
4,166,932	-		ABI39_RS16355	0.56	-1.2
4,166,953	-		ABI39_RS16355	0.58	+0.1
4,166,957	-		ABI39_RS16355	0.59	+0.6
4,166,974	+		ABI39_RS16355	0.61	-0.0
4,166,976	+		ABI39_RS16355	0.61	-0.7
4,167,005	-		ABI39_RS16355	0.64	-0.5
4,167,030	+		ABI39_RS16355	0.67	-0.6
4,167,034	+		ABI39_RS16355	0.68	-0.2
4,167,088	+		ABI39_RS16355	0.74	-1.0
4,167,119	+		ABI39_RS16355	0.77	-1.1
4,167,120	-		ABI39_RS16355	0.77	-0.2
4,167,139	-		ABI39_RS16355	0.80	-1.5
4,167,141	+		ABI39_RS16355	0.80	-0.2
4,167,147	+		ABI39_RS16355	0.81	-0.2
4,167,148	-		ABI39_RS16355	0.81	+0.0
4,167,187	+		ABI39_RS16355	0.85	-1.3
4,167,260	-				-0.4
4,167,268	+				-0.5
4,167,305	-				-0.4
4,167,358	-				-2.4
4,167,358	-				+0.1
4,167,361	+				-0.7
4,167,435	-				-0.3
4,167,528	+				-0.4
4,167,574	-				-0.4
4,167,645	+				+0.1
4,167,820	+		ABI39_RS16360	0.38	+0.1
4,167,820	+		ABI39_RS16360	0.38	-1.3
4,167,820	+		ABI39_RS16360	0.38	-0.4
4,167,821	-		ABI39_RS16360	0.38	-0.3
4,167,821	-		ABI39_RS16360	0.38	+0.3
4,167,837	-		ABI39_RS16360	0.42	-0.3
4,168,301	+				+0.9