Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS06045

Experiment: Xylan from corn core; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylan from corn core; autoclaved 2.5 mg/ml (C)
1,680,470	-				+0.3
1,680,470	-				-0.6
1,680,498	-				-0.1
1,680,563	+				+0.2
1,680,563	+				-0.0
1,680,564	-				+0.6
1,680,565	+				+0.0
1,680,568	-				+0.2
1,680,609	+				-0.1
1,680,693	-				+0.1
1,680,777	-				+0.5
1,680,868	-		ABI39_RS06040	0.17	+0.6
1,680,970	-		ABI39_RS06040	0.32	-0.8
1,681,110	+		ABI39_RS06040	0.52	+0.1
1,681,333	+		ABI39_RS06040	0.85	-0.4
1,681,403	-				+0.2
1,681,533	+		ABI39_RS06045	0.20	-0.3
1,681,534	-		ABI39_RS06045	0.20	-1.5
1,681,758	+		ABI39_RS06045	0.68	-1.2
1,681,844	+		ABI39_RS06045	0.86	-0.4
1,681,914	+				-0.2
1,681,922	+				-1.0
1,681,922	+				-3.9
1,681,934	+				+0.4
1,681,946	-				+0.2
1,681,988	-		ABI39_RS06050	0.11	+0.2
1,682,295	+		ABI39_RS06050	0.44	-0.3
1,682,296	-		ABI39_RS06050	0.44	+1.1
1,682,397	+		ABI39_RS06050	0.55	+1.2
1,682,421	-		ABI39_RS06050	0.57	+0.6
1,682,510	+		ABI39_RS06050	0.67	-0.9
1,682,597	+		ABI39_RS06050	0.76	+0.8
1,682,597	+		ABI39_RS06050	0.76	-1.4
1,682,598	-		ABI39_RS06050	0.76	-0.5
1,682,599	+		ABI39_RS06050	0.76	-0.7
1,682,703	-		ABI39_RS06050	0.88	-0.2
1,682,747	+				+3.8
1,682,748	-				+0.3
1,682,827	-				+0.2